mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 40.8% | 96.6 / 181.3 | 142 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,708,709 | 0 | T | A | 21.6% | 78.4 / 15.4 | 54 | R597R (CGT→CGA) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| * | NC_000913 | 935,584 | 0 | A | T | 20.0% | 196.3 / 11.7 | 92 | P787P (CCA→CCT) | ftsK | cell division DNA translocase FtsK |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 696863 = | 73 (0.360) | 53 (0.280) +GAAGAAACAATC |
18/266 | 15.2 | 28.0% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | NC_000913 | = 697134 | 224 (1.100) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | NC_000913 | 4542682 = | 289 (1.410) | 13 (0.070) | 13/272 | 17.7 | 4.3% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 314 (1.640) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4542690 | 286 (1.400) | 12 (0.060) | 12/272 | 18.2 | 4.0% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 314 (1.640) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 781446 | 127 (0.620) | 55 (0.310) | 9/250 | 18.9 | 30.7% | intergenic (+2/‑131) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | NC_000913 | 2521487 = | 139 (0.790) | intergenic (+159/+106) | lysV/xapR | tRNA‑Lys/DNA‑binding transcriptional activator XapR | |||||
| * | ? | NC_000913 | = 1287084 | 62 (0.300) | 17 (0.100) | 5/250 | 21.7 | 12.8% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | NC_000913 | 1287557 = | 179 (1.020) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | 120721 = | 201 (0.980) | 3 (0.010) | 3/284 | 24.8 | 1.5% | coding (831/1374 nt) | aroP | aromatic amino acid:H(+) symporter AroP |
| ? | NC_000913 | 2077123 = | 186 (0.930) | coding (12/369 nt) | cbeA | CP4‑44 prophage; cytoskeleton bundling‑enhancing antitoxin CbeA | |||||
| * | ? | NC_000913 | 2289412 = | NA (NA) | 3 (0.010) | 3/288 | 25.0 | 1.8% | noncoding (702/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2568733 | 168 (0.820) | coding (779/1188 nt) | eutG | putative alcohol dehydrogenase in ethanolamine utilization | |||||
| * | ? | NC_000913 | = 982475 | 163 (0.800) | 3 (0.010) | 3/288 | 25.0 | 1.5% | coding (1429/1848 nt) | ldtD | L,D‑transpeptidase LdtD |
| ? | NC_000913 | = 2476128 | 241 (1.190) | coding (256/306 nt) coding (35/141 nt) |
yfdT ypdJ |
CPS‑53 (KpLE1) prophage; protein YfdT CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ |
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| * | ? | NC_000913 | = 1486788 | 193 (0.940) | 3 (0.010) | 3/290 | 25.1 | 1.6% | coding (3728/3903 nt) | hrpA | ATP‑dependent RNA helicase HrpA |
| ? | NC_000913 | 2448187 = | 174 (0.850) | coding (254/933 nt) | prmB | 50S ribosomal subunit protein L3 N(5)‑glutamine methyltransferase | |||||
| * | ? | NC_000913 | 857581 = | NA (NA) | 3 (0.010) | 3/290 | 25.1 | 1.4% | intergenic (+26/+215) | ybiT/ybiU | ABC transporter ATP‑binding protein YbiT/DUF1479 domain‑containing protein YbiU |
| ? | NC_000913 | = 2594825 | 211 (1.030) | coding (1035/2016 nt) | tmcA | tRNA(Met) cytidine acetyltransferase | |||||