mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 32.1% | 92.4 / 73.6 | 83 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,286,965 | 0 | A | G | 26.3% | 49.7 / 16.3 | 42 | D86G (GAC→GGC) | ychS | putative uncharacterized protein YchS |
| * | NC_000913 | 2,947,467 | 0 | A | C | 26.1% | 48.2 / 10.3 | 23 | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | NC_000913 | 2,818,149 | 0 | T | C | 23.3% | 93.5 / 21.1 | 46 | intergenic (‑14/+49) | argZ/argY | tRNA‑Arg/tRNA‑Arg |
| * | NC_000913 | 2,947,465 | 0 | T | . | 23.1% | 66.7 / 16.7 | 27 | intergenic (+2/‑32) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | NC_000913 | 1,286,974 | 0 | C | T | 21.7% | 93.9 / 19.9 | 48 | A89V (GCC→GTC) | ychS | putative uncharacterized protein YchS |
| * | NC_000913 | 2,818,145 | 0 | T | C | 20.9% | 97.3 / 18.7 | 46 | intergenic (‑10/+53) | argZ/argY | tRNA‑Arg/tRNA‑Arg |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 100 (1.030) | 41 (0.450) | 35/274 | 3.2 | 31.0% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 89 (0.980) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 1207805 | 77 (0.790) | 15 (0.170) | 14/260 | 7.7 | 15.7% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 92 (1.060) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 1207790 = | 73 (0.750) | 7 (0.080) | 7/260 | 10.7 | 8.1% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 93 (1.080) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 781369 = | 58 (0.600) | 28 (0.290) +G |
7/290 | 11.6 | 42.3% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 19 (0.200) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | 781577 = | 51 (0.530) | 44 (0.460) +G |
6/290 | 12.2 | 55.9% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 19 (0.200) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | 780554 = | 104 (1.070) | 27 (0.280) +G |
6/290 | 12.2 | 30.6% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 19 (0.200) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | = 966215 | 93 (0.960) | 3 (0.030) | 3/290 | 14.2 | 3.4% | coding (1896/2265 nt) | ycaI | conserved inner membrane protein YcaI |
| ? | NC_000913 | = 2698211 | 80 (0.830) | coding (340/636 nt) | pgpC | phosphatidylglycerophosphatase C | |||||
| * | ? | NC_000913 | = 2324346 | 86 (0.890) | 3 (0.030) | 3/292 | 14.3 | 3.0% | coding (238/651 nt) | atoA | acetyl‑CoA:acetoacetyl‑CoA transferase subunit beta |
| ? | NC_000913 | = 2789842 | 105 (1.080) | coding (858/978 nt) | csiD | PF08943 family protein CsiD | |||||
| * | ? | NC_000913 | 2202482 = | 83 (0.860) | 3 (0.030) | 3/292 | 14.3 | 3.2% | coding (2204/3633 nt) | yehI | DUF4132 domain‑containing protein YehI |
| ? | NC_000913 | 3922251 = | 99 (1.020) | coding (190/381 nt) | atpI | ATP synthase accessory factor | |||||