mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 422,429 | 0 | T | G | 25.0% | 428.6 / 33.5 | 198 | intergenic (+70/‑89) | proY/malZ | putative transporter ProY/maltodextrin glucosidase |
| * | NC_000913 | 935,584 | 0 | A | T | 20.7% | 185.4 / 25.5 | 118 | P787P (CCA→CCT) | ftsK | cell division DNA translocase FtsK |
| Marginal new junction evidence (lowest skew 10 of 22 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1 = | 0 (0.000) | 91 (0.340) | 52/292 | 4.7 | 100% | intergenic (–/‑189) | –/thrL | –/thr operon leader peptide |
| ? | NC_000913 | = 4641652 | 0 (0.000) | intergenic (+24/–) | yjtD/– | putative rRNA methyltransferase/– | |||||
| * | ? | NC_000913 | = 152394 | 256 (0.970) | 56 (0.210) | 26/290 | 11.1 | 17.9% | coding (419/570 nt) | yadM | putative fimbrial protein YadM |
| ? | NC_000913 | 273955 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1287084 | 71 (0.270) | 38 (0.160) | 17/252 | 12.8 | 20.7% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | NC_000913 | 1287557 = | 230 (1.000) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | 152391 = | 264 (0.990) | 49 (0.180) | 20/292 | 13.6 | 15.7% | coding (422/570 nt) | yadM | putative fimbrial protein YadM |
| ? | NC_000913 | = 275149 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 781369 = | 158 (0.590) | 88 (0.330) +G |
18/290 | 14.4 | 44.3% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 65 (0.240) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | = 1287262 | 152 (0.570) | 13 (0.060) | 11/250 | 15.9 | 9.3% | noncoding (67/85 nt) | tyrV | tRNA‑Tyr |
| ? | NC_000913 | 1287382 = | 122 (0.530) | intergenic (‑54/+156) | tyrV/tyrT | tRNA‑Tyr/tRNA‑Tyr | |||||
| * | ? | NC_000913 | 781369 = | 158 (0.590) | 62 (0.240) +GAAG |
13/284 | 16.6 | 34.9% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 80 (0.300) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | 781577 = | 160 (0.600) | 127 (0.480) +G |
12/290 | 17.5 | 53.2% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 65 (0.240) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | 780554 = | 293 (1.100) | 81 (0.310) +G |
12/290 | 17.5 | 31.3% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 65 (0.240) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | 152391 = | 264 (0.990) | 13 (0.050) | 12/292 | 17.6 | 4.7% | coding (422/570 nt) | yadM | putative fimbrial protein YadM |
| ? | NC_000913 | = 2067353 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||