New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 128708475 (0.290)10 (0.040) 5/254 28.9 6.9% noncoding (153/171 nt) rttR small RNA RttR
?NC_000913 = 4175537 206 (0.900)noncoding (66/85 nt) tyrU tRNA‑Tyr
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 101 total aligned reads displayed.

TGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACT  >  NC_000913/1286940‑1287232
                                                                                                                                                |                                                                                                                                                    
tGCCTGCGGCAACGCTCTCTCGCTGCCGCTCTAGTCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGCCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTc                                                                                                                                                  <  2:1125044/149‑1 (MQ=11)
 gCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTagaac                                                                                                                                                 >  2:1125173/1‑145 (MQ=255)
           aCGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGGGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCGGCGCTgcgcg                                                                                                                                       >  2:1125170/1‑149 (MQ=255)
           aCGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTAGAAGCTTCTCATCCTTACACGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcgcg                                                                                                                                       >  2:1125092/1‑149 (MQ=255)
                ctctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCg                                                                                                                                  >  1:1125089/1‑149 (MQ=255)
                                    gAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAgc                                                                                                                                               <  2:1125061/116‑1 (MQ=255)
                                     aaCCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125240/1‑108 (MQ=255)
                                      aCCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGATTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAgc                                                                                                                                               <  2:1125063/114‑1 (MQ=255)
                                         ttAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125185/1‑104 (MQ=255)
                                             tCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125234/1‑100 (MQ=255)
                                              cGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGGTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125242/1‑99 (MQ=255)
                                                aaGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAgc                                                                                                                                               <  2:1125070/104‑1 (MQ=255)
                                                       tcATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125195/1‑90 (MQ=255)
                                                         aTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125225/1‑88 (MQ=255)
                                                          tCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125205/1‑87 (MQ=255)
                                                          tCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125206/1‑87 (MQ=255)
                                                          tCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125207/1‑87 (MQ=255)
                                                            cTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125209/1‑85 (MQ=255)
                                                             ttCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125211/1‑84 (MQ=255)
                                                             ttCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGCGGCGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCg                                                                                     <  2:1125083/149‑1 (MQ=255)
                                                              tCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTc                                                                                                                                                  <  2:1125084/87‑1 (MQ=255)
                                                               ccccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125222/1‑82 (MQ=255)
                                                                 ccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTc                                                                                 <  2:1125088/149‑1 (MQ=255)
                                                                  cGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                                     >  1:1125357/1‑80 (MQ=255)
                                                                  cGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCg                                                                                <  2:1125089/149‑1 (MQ=255)
                                                                     ttGGGCAGAATATTTGATTGCGGATTCGCTTGAGATTTCAGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGcc                                                                                                                 <  2:1125090/112‑1 (MQ=255)
                                                                         gCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125264/1‑72 (MQ=255)
                                                                          cAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTgg                                                                        <  1:1125092/149‑1 (MQ=255)
                                                                           aGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                                     >  1:1125365/1‑71 (MQ=255)
                                                                            gAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTc                                                                      >  2:1125115/1‑149 (MQ=255)
                                                                             aaTATTTGATTGCGGATTCGCTTGAGAATTCAGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCt                                                                           <  1:1125096/143‑1 (MQ=255)
                                                                             aaTATTTGATTGCGGATTCGATTGAGATTTCAGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCg                                                                     <  2:1125095/149‑1 (MQ=255)
                                                                              atatTTGATTGCGGATTCGCTTGAGATTTCAGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACt                                                                                                                                                   <  1:1125097/70‑1 (MQ=255)
                                                                               tatTTGATTGCGGATTCGCTTGAGATTTCAGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACt                                                                                                                                                   <  1:1125101/69‑1 (MQ=255)
                                                                                 tttGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttc                                                                                                                                                     >  2:1125239/1‑64 (MQ=255)
                                                                                 tttGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttc                                                                                                                                                     <  1:1125239/65‑2 (MQ=255)
                                                                                 tttGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125273/1‑64 (MQ=255)
                                                                                     aTTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTtct                                                             <  1:3869275/149‑1 (MQ=255)
                                                                                      ttGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125270/1‑59 (MQ=255)
                                                                                      ttGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125268/1‑59 (MQ=255)
                                                                                          ggATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125272/1‑55 (MQ=255)
                                                                                          ggATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125265/1‑55 (MQ=255)
                                                                                             ttCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125261/1‑52 (MQ=255)
                                                                                              tCGCTTGAGAGTTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTcc                                                    <  2:1125110/149‑1 (MQ=255)
                                                                                               cGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125286/1‑50 (MQ=255)
                                                                                                gCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAATCATCGCTTCGCGCATCACCCTTCGGGACGTTGCCTGTGGCAACggt                                                                                                     >  2:1125369/1‑96 (MQ=14)
                                                                                                 cTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                                     >  1:1125362/1‑49 (MQ=255)
                                                                                                  ttGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttc                                                                                                                                                     >  1:1125259/1‑47 (MQ=255)
                                                                                                  ttGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125263/1‑47 (MQ=255)
                                                                                                  ttGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAc                                                                                                                                                    >  1:1125275/1‑49 (MQ=255)
                                                                                                      gagTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                      >  1:1125267/1‑43 (MQ=32)
                                                                                                      gagTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTcc                                                    <  1:1125113/141‑1 (MQ=255)
                                                                                                      gagTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTcc                                                    >  2:1125113/1‑141 (MQ=255)
                                                                                                      gaattCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTc                                                                      >  2:1125120/4‑123 (MQ=0)
                                                                                                      gaattCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTc                                                                      <  1:1125120/120‑1 (MQ=0)
                                                                                                        tttCCGGGTCTTTTGAAAGTGATGGTTGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGc                                          <  2:1125123/148‑1 (MQ=255)
                                                                                                        cttCAGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGc                                          <  2:1125114/148‑1 (MQ=255)
                                                                                                         ttCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                         <  1:1125115/149‑1 (MQ=255)
                                                                                                         ttCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                         >  2:1125147/1‑149 (MQ=255)
                                                                                                            cggggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGaa                                      <  2:1125126/148‑1 (MQ=18)
                                                                                                             ggggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGaa                                      <  1:1125118/148‑1 (MQ=21)
                                                                                                               ggcTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAatat                                   <  1:1125119/147‑1 (MQ=25)
                                                                                                               gACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                                     >  1:1125296/1‑35 (MQ=33)
                                                                                                               gACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                                     >  1:1125295/1‑35 (MQ=33)
                                                                                                               gACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                                     >  1:1125285/1‑35 (MQ=33)
                                                                                                                 cTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTc                                                                      <  1:1125124/112‑1 (MQ=39)
                                                                                                                 cTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTc                                                                      >  2:1125124/1‑112 (MQ=39)
                                                                                                                 cTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAttt                                 <  1:1125125/149‑1 (MQ=37)
                                                                                                                   tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGc                                                                 <  1:1125127/115‑1 (MQ=39)
                                                                                                                   tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGc                                                                 >  2:1125127/1‑115 (MQ=39)
                                                                                                                    ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGt                                                                       <  2:1125131/108‑1 (MQ=40)
                                                                                                                    ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGt                                                                       >  1:1125131/1‑108 (MQ=40)
                                                                                                                      gAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAAtt                             <  1:1125132/148‑1 (MQ=39)
                                                                                                                        aaGTGATGGTGGTGGGGGAAGGATTACTCACATCTAAGAGCATCGCCCGTCGTTTAGTTTCATGACGGAACGCTCTCTAGGTGGGGATCGAGTATAAACTAGGTCGAAGCATAAAATAATTAAAAGAATGGGGAGGATATTTAATTGCg                          >  2:1125294/1‑149 (MQ=255)
                                                                                                                          gTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTc                                                                                 <  1:1125134/92‑1 (MQ=35)
                                                                                                                            gATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGAGCTTCGCCCGTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGGCGCGCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGGAGAATGTTTAAGTGCGGGtt                      >  2:1125252/1‑149 (MQ=11)
                                                                                                                              tggtggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCtt                                                                          >  1:1125135/1‑95 (MQ=33)
                                                                                                                              tggtggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCtt                                                                          <  2:1125135/95‑1 (MQ=33)
                                                                                                                               ggtggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCTGCCGCAAAGCACTCTCGCGGGCGCACGAATCGGAACTTGGTAGAAGCATATAATAAATCCCCCCATGGGGAGAATAATTAATTGGGGAttagg                   >  2:1125297/1‑146 (MQ=2)
                                                                                                                                    tggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa              >  2:1125192/1‑149 (MQ=40)
                                                                                                                                    tggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa              <  1:1125137/149‑1 (MQ=40)
                                                                                                                                     gggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCa                                               <  1:1125138/115‑1 (MQ=33)
                                                                                                                                     gggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGACGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCa                                               >  2:1125138/1‑115 (MQ=18)
                                                                                                                                       gggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGt           >  1:1125204/1‑149 (MQ=255)
                                                                                                                                        ggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCg                                                                                     >  1:1125139/1‑74 (MQ=31)
                                                                                                                                         gAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCtt                                                                          <  1:1125091/84‑1 (MQ=33)
                                                                                                                                         gAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCtt                                                                          >  2:1125091/1‑84 (MQ=33)
                                                                                                                                         gAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAAtt                             <  1:1125141/129‑1 (MQ=38)
                                                                                                                                          aaGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCa        <  2:1125142/149‑1 (MQ=255)
                                                                                                                                            ggATTTCTGAGGTCTGCGCGCTTGTCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAgg      <  1:1125150/149‑1 (MQ=14)
                                                                                                                                            ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAgg      >  2:1125301/1‑149 (MQ=255)
                                                                                                                                             gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg     >  2:1125303/1‑149 (MQ=255)
                                                                                                                                             gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg     >  2:1125330/1‑149 (MQ=255)
                                                                                                                                              aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg     >  1:1125302/1‑148 (MQ=255)
                                                                                                                                              aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGa    >  2:1125200/1‑149 (MQ=255)
                                                                                                                                               ttACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGaa                                                                              <  2:1125139/74‑1 (MQ=34)
                                                                                                                                               ttACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGAc   >  1:1125236/1‑149 (MQ=255)
                                                                                                                                               ttACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGAc   >  1:1125198/1‑149 (MQ=255)
                                                                                                                                                tACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACt  >  1:1125241/1‑149 (MQ=255)
                                                                                                                                                tACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTGGGTCGAAGCTACTCATCATTCCACACATGGTAAGAATATTTAATTGCGGAATCGTTGGTAAATTAAGGGACt  >  2:1125396/1‑149 (MQ=14)
                                                                                                                                                |                                                                                                                                                    
TGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACT  >  NC_000913/1286940‑1287232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.