Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP009273 2,400,028 Δ9 bp coding (85‑93/939 nt) lrhA ← transcriptional repressor of flagellar, motility and chemotaxis genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 2400028 2400036 9 149 [0] [0] 148 lrhA transcriptional repressor of flagellar, motility and chemotaxis genes

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 24000270 (0.000)135 (1.070) 90/184 0.2 100% coding (94/939 nt) lrhA transcriptional repressor of flagellar, motility and chemotaxis genes
?CP009273 2400037 = 0 (0.000)coding (84/939 nt) lrhA transcriptional repressor of flagellar, motility and chemotaxis genes

Only 100 of 149 total aligned reads displayed.

TTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTAT  >  CP009273/2399927‑2400127
                                                                                                    |                                                                                                    
  gttgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaa                                                                                                    >  1:809375‑M1/1‑99 (MQ=255)
  gttgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaa                                                                                                    <  1:1227952‑M1/101‑3 (MQ=255)
  gttgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaa                                                                                                    >  2:1114450‑M1/1‑99 (MQ=255)
    tgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaa                                                                                                  <  1:1528038‑M1/101‑5 (MQ=255)
       gACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtg                                                                                               <  1:171150‑M1/101‑8 (MQ=255)
        aCCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgt                                                                                              >  1:2994344‑M1/1‑93 (MQ=255)
         ccGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgtt                                                                                             <  2:1720475‑M1/101‑10 (MQ=255)
         ccGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgtt                                                                                             >  1:2670528‑M1/1‑92 (MQ=255)
          cGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACACTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGTGGCAGCaaaagtgttc                                                                                            >  1:2439691‑M1/1‑91 (MQ=255)
           gTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGGACGACACACATTGGCAGCaaaagtgttca                                                                                           >  1:1113815‑M1/1‑90 (MQ=255)
              aCGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagat                                                                                        <  1:21909‑M1/101‑15 (MQ=255)
               cGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatc                                                                                       >  2:3264205‑M1/1‑86 (MQ=255)
               cGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatc                                                                                       >  2:1127140‑M1/1‑86 (MQ=255)
               cGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatc                                                                                       <  2:1659031‑M1/101‑16 (MQ=255)
                 aGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcgg                                                                                     >  2:421881‑M1/1‑84 (MQ=255)
                   cGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggca                                                                                   <  1:1855745‑M1/101‑20 (MQ=255)
                   cGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggca                                                                                   >  1:212207‑M1/1‑82 (MQ=255)
                    gAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaa                                                                                  <  1:1133273‑M1/101‑21 (MQ=255)
                      aCAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaaca                                                                                >  1:177778‑M1/1‑79 (MQ=255)
                       cAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacag                                                                               <  2:2307229‑M1/101‑24 (MQ=255)
                         gTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagca                                                                             >  2:1423572‑M1/1‑76 (MQ=255)
                         gTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagca                                                                             <  2:2154973‑M1/101‑26 (MQ=255)
                         gTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagca                                                                             <  2:2298166‑M1/101‑26 (MQ=255)
                          ttCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaa                                                                            >  2:1622728‑M1/1‑75 (MQ=255)
                            cTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggca                                                                                   >  2:1550004‑M1/1‑73 (MQ=255)
                               tCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaat                                                                       <  1:180333‑M1/101‑32 (MQ=255)
                                cccAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCANCaaaagtgttcagatcggcaacagcaacaaatg                                                                      >  2:361653‑M1/1‑69 (MQ=255)
                                 ccAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgt                                                                     >  2:1371620‑M1/1‑68 (MQ=255)
                                   aaCGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttc                                                                   >  1:2799520‑M1/1‑66 (MQ=255)
                                    aCGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttct                                                                  >  2:1271464‑M1/1‑65 (MQ=255)
                                      gAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctca                                                                <  2:2966328‑M1/101‑39 (MQ=255)
                                      gAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctca                                                                >  2:728958‑M1/1‑63 (MQ=255)
                                      gAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctca                                                                <  2:519952‑M1/101‑39 (MQ=255)
                                         ttgttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagca                                                             >  1:3303254‑M1/1‑60 (MQ=255)
                                          tgttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcag                                                            >  2:478660‑M1/1‑59 (MQ=255)
                                           gttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcaga                                                           >  2:3096286‑M1/1‑58 (MQ=255)
                                           gttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcaga                                                           >  2:697544‑M1/1‑58 (MQ=255)
                                           gttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcaga                                                           <  2:1831422‑M1/101‑44 (MQ=255)
                                           gttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcaga                                                           >  2:1196882‑M1/1‑58 (MQ=255)
                                           gttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcaga                                                           >  1:2476770‑M1/1‑58 (MQ=255)
                                              ccAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcg                                                        <  1:1401379‑M1/101‑47 (MQ=255)
                                               cAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcga                                                       <  2:2576636‑M1/101‑48 (MQ=255)
                                                aGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgag                                                      <  2:872388‑M1/101‑49 (MQ=255)
                                                aGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgag                                                      <  1:852948‑M1/101‑49 (MQ=255)
                                                aGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagggttcagatcggcaacagcaacaaatgttctcagcagatcgag                                                      >  2:2056366‑M1/1‑53 (MQ=255)
                                                 gACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgagg                                                     <  2:914722‑M1/101‑50 (MQ=255)
                                                 gACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgagg                                                     <  2:1514625‑M1/101‑50 (MQ=255)
                                                  aCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggt                                                    >  2:873167‑M1/1‑51 (MQ=255)
                                                  aCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggt                                                    <  2:1955116‑M1/101‑51 (MQ=255)
                                                   cGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtc                                                   <  2:538492‑M1/101‑52 (MQ=255)
                                                   cGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtc                                                   <  2:458787‑M1/101‑52 (MQ=255)
                                                    gCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcg                                                  <  2:2388070‑M1/101‑53 (MQ=255)
                                                    gCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcg                                                  >  1:2767836‑M1/1‑49 (MQ=255)
                                                    gCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcg                                                  <  1:2189385‑M1/101‑53 (MQ=255)
                                                     cTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcga                                                 <  1:398476‑M1/101‑54 (MQ=255)
                                                          tttGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggtta                                            >  2:2321122‑M1/1‑43 (MQ=255)
                                                          tttGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggtta                                            <  1:3264205‑M1/101‑59 (MQ=255)
                                                           ttGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaa                                           <  1:1498821‑M1/101‑60 (MQ=255)
                                                            tGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtggtcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaat                                          >  2:943878‑M1/1‑41 (MQ=255)
                                                             gCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaatt                                         <  1:3252129‑M1/101‑62 (MQ=255)
                                                                gACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatc                                      <  2:1771289‑M1/101‑65 (MQ=255)
                                                                 aCTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcg                                     >  1:2539053‑M1/1‑36 (MQ=255)
                                                                 aCTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcg                                     >  2:3016682‑M1/1‑36 (MQ=255)
                                                                 aCTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcg                                     <  1:2883531‑M1/101‑66 (MQ=255)
                                                                    tACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggac                                  >  2:2916852‑M1/1‑33 (MQ=255)
                                                                     aCGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacg                                 <  2:2322053‑M1/101‑70 (MQ=255)
                                                                     aCGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacg                                 >  1:1998982‑M1/1‑32 (MQ=255)
                                                                     aCGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacg                                 <  1:336686‑M1/101‑70 (MQ=255)
                                                                     aCGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacg                                 <  1:676155‑M1/101‑70 (MQ=255)
                                                                      cggcggACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacga                                >  2:1204180‑M1/1‑31 (MQ=255)
                                                                         cggACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgattt                             <  1:1152132‑M1/101‑74 (MQ=255)
                                                                            aCTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgca                          >  2:1350231‑M1/1‑25 (MQ=255)
                                                                             cTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcac                         >  1:2329789‑M1/1‑24 (MQ=255)
                                                                              tGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcact                        >  1:2033855‑M1/1‑23 (MQ=255)
                                                                              tGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcact                        <  2:2809958‑M1/101‑79 (MQ=255)
                                                                               gAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcactt                       <  1:3047101‑M1/101‑80 (MQ=255)
                                                                                aGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcactta                      >  1:1453206‑M1/1‑21 (MQ=255)
                                                                                   aCGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatca                   <  1:2543808‑M1/101‑84 (MQ=255)
                                                                                     gACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcata                 >  1:2394582‑M1/1‑16 (MQ=255)
                                                                                     gACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcata                 >  2:3336920‑M1/1‑16 (MQ=255)
                                                                                      acacacAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatat                <  2:2554310‑M1/101‑87 (MQ=255)
                                                                                      acacacAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatat                >  1:2659498‑M1/1‑15 (MQ=255)
                                                                                        acacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatat              <  2:1167516‑M1/101‑89 (MQ=255)
                                                                                        acacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatat              <  1:1779803‑M1/101‑89 (MQ=255)
                                                                                          acaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatatta            <  1:1655958‑M1/101‑91 (MQ=255)
                                                                                          acaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatatta            >  1:660799‑M1/1‑11 (MQ=255)
                                                                                           caGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattat           <  1:1707114‑M1/101‑92 (MQ=255)
                                                                                           caGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattat           <  1:2060515‑M1/101‑92 (MQ=255)
                                                                                           caGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattat           >  2:2902187‑M1/1‑10 (MQ=255)
                                                                                           caGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattat           >  1:1253564‑M1/1‑10 (MQ=255)
                                                                                            aGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatc          <  2:2101335‑M1/101‑93 (MQ=255)
                                                                                             gCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatca         <  2:409699‑M1/101‑94 (MQ=255)
                                                                                              cGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcac        >  2:2922438‑M1/1‑7 (MQ=255)
                                                                                                 cagcaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcactta     <  1:396106‑M1/101‑98 (MQ=255)
                                                                                                 cagcaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcactta     >  2:1845151‑M1/1‑4 (MQ=255)
                                                                                                  agcaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttac    >  2:2807357‑M1/1‑3 (MQ=255)
                                                                                                  agcaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttac    >  1:2737537‑M1/1‑3 (MQ=255)
                                                                                                  agcaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttac    >  2:3254013‑M1/1‑3 (MQ=255)
                                                                                                  agcaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttac    <  2:248238‑M1/101‑99 (MQ=255)
                                                                                                    caaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttactg  <  1:1566554‑M1/101‑101 (MQ=255)
                                                                                                    |                                                                                                    
TTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTAT  >  CP009273/2399927‑2400127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑