breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	4,158,149	0	T	C	54.8%	10.4 / inf	385	intergenic (+21/‑151)	rrsB/gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu
*	CP009273	4,158,143	0	A	T	53.8%	31.8 / inf	364	intergenic (+15/‑157)	rrsB/gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu
*	CP009273	1,422,957	0	A	G	22.3%	442.3 / 140.7	211	pseudogene (27/981 nt)	insH1	IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	187 (1.030)	99 (0.580) +AATTCC	71/238	4.0	36.6%	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	4033989 =	173 (0.960)					noncoding (113/120 nt)	rrfA	5S ribosomal RNA of rrnA operon
*	?	CP009273	3416618 =	170 (0.940)	69 (0.420) +GAATTAATTCC	51/228	7.0	30.6%	intergenic (+65/+164)	yhdZ/rrfF	putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon
	?	CP009273	4033989 =	173 (0.960)					noncoding (113/120 nt)	rrfA	5S ribosomal RNA of rrnA operon
*	?	CP009273	360104 =	187 (1.030)	71 (0.060) +AATTCCCC	51/234	7.4	28.9%	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	KX077536	8127 =	NA (NA)					intergenic (+52/–)	unknown/–	cat/–
*	?	CP009273	3416618 =	170 (0.940)	45 (0.040) +GAATTAATTCCCC	32/224	11.9	22.8%	intergenic (+65/+164)	yhdZ/rrfF	putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon
	?	KX077536	8127 =	NA (NA)					intergenic (+52/–)	unknown/–	cat/–