Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009273	3778545	3780205	1661	78 [76]	[76] 77	gpmM–[envC]	gpmM,[envC]

AATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATGAGGTTGTCGCAATGTTGGT  >  CP009273/3778444‑3778627                                                                                                     |                                                                                    aaTACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGAt                                                                                     <  2:3165794/101‑1 (MQ=255) aaTACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGAt                                                                                     <  1:42337/101‑1 (MQ=255)  aTACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATc                                                                                    <  1:1927585/101‑1 (MQ=255)         cagcGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCagag                                                                             <  2:1795765/101‑1 (MQ=255)            cgcgTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTTCCGCGGGCGGGCGGATATTTTTATTTTCAGAGGCt                                                                          >  2:2889766/1‑101 (MQ=255)             gcgTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGGCGTATATTTTGATCTTCAGAGGCTa                                                                         >  1:982000/1‑101 (MQ=255)                 tAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTAtttt                                                                     <  2:741712/101‑1 (MQ=255)                   aCTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTAt                                                                   <  2:2162638/101‑1 (MQ=255)                    cTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTTTCCCGGGCGGGCGCATATTTTTATCTTCAGAGGCTAttttttt                                                                  >  2:1413910/1‑98 (MQ=255)                     tGGAATGCAATTTTGCAGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCg                                                                 <  1:991842/101‑1 (MQ=255)                      ggAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGGCGCGGGCGGTCGTATATTTTTATCTTTAGAGGGTATTTTATCGa                                                                >  1:1541866/1‑101 (MQ=255)                      ggAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGa                                                                <  1:429032/101‑1 (MQ=255)                        aaTGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTTCCCCGGGCGGGCGTATATTTTTTTCTTCTGAGGCTATTTTTTCGAtt                                                              >  2:3126437/1‑101 (MQ=255)                          tGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCa                                                            <  2:2057856/101‑1 (MQ=255)                          tGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCa                                                            <  1:253973/101‑1 (MQ=255)                          tGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCa                                                            <  2:1323996/101‑1 (MQ=255)                           gCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAg                                                           <  1:1046325/101‑1 (MQ=255)                           gCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAg                                                           <  2:3033313/101‑1 (MQ=255)                             aaTTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCt                                                         <  1:478299/101‑1 (MQ=255)                               ttttGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTgt                                                       <  2:3133617/101‑1 (MQ=255)                                tttGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTTCCGCGGGCGGGCGTATATTTTTTTTTTCAGAGGGTATTTTTTCGATTCAGCTgtt                                                      >  2:1476764/1‑100 (MQ=255)                                tttGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTgta                                                      <  2:2590726/101‑1 (MQ=255)                                 ttGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTgtag                                                     <  2:3056148/101‑1 (MQ=255)                                  tGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTgtagt                                                    <  1:2343977/101‑1 (MQ=255)                                    cGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTgtagtac                                                  <  1:2150166/101‑2 (MQ=255)                                    cGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTaa                                                  <  1:1427290/101‑1 (MQ=255)                                     ggggCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTaaa                                                 <  1:470787/101‑1 (MQ=255)                                      gggCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTTTCGCGAGCGGGCGTATATTTTTTTTTTTATAGGCTATTTTTTTTATTTAGCTGTAGGaaaa                                                >  2:2397674/1‑101 (MQ=255)                                      gggCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGGCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTaaaa                                                >  1:2307952/1‑101 (MQ=255)                                        gcgcGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAAtt                                              <  1:2580130/101‑1 (MQ=255)                                         cgcgACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTa                                             <  2:2893481/101‑1 (MQ=255)                                         cgcgACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTa                                             <  1:3216257/101‑1 (MQ=255)                                         cgcgACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTa                                             <  2:237759/101‑1 (MQ=255)                                          gcgACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTAc                                            <  1:2442244/101‑1 (MQ=255)                                          gcgACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTAc                                            <  2:254831/101‑1 (MQ=255)                                          gcgACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTAc                                            <  1:2452146/101‑1 (MQ=255)                                           cgacgaAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACg                                           <  1:1852616/101‑1 (MQ=255)                                            gacgaAAAAAAAGCGTAAATCTGGCATCGGCTTTCCGCGGGCGGGCGTATATTTTTTTCTTCAGAGGCTATTTTTTTGATTTAGCTGTTGTAAAATTACGc                                          >  2:3172136/1‑101 (MQ=255)                                             acgaAAAAAAAGCGTAAATCTGGCATCGGCTTTTCGCGGGCGGGCGGATATTTTTATTTTCAGAGGGTATTTTTTTTATTTAGCTGTAGTAAAAATACGCa                                         >  2:2516383/1‑101 (MQ=255)                                             acgaAAAAAAAGCGTAAATCTGGCATCGGCTTTTCGCCCGCGGGGGTATTTTTTGTTTTTCAGAGGCTATTTTTTTCATTTAGCTGTAGTAAAAATAAGCa                                         >  2:2687601/1‑101 (MQ=255)                                             acgaAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCa                                         <  1:2748421/101‑1 (MQ=255)                                             acgaAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCa                                         <  2:104547/101‑1 (MQ=255)                                                 aaaaaaaGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAAtt                                     <  2:1795323/101‑1 (MQ=255)                                                 aaaaaaaGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAAtt                                     <  1:1333797/101‑1 (MQ=255)                                                  aaaaaaGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAAttt                                    <  1:1887662/101‑1 (MQ=255)                                                   aaaaaGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAAtttt                                   >  1:1193028/1‑101 (MQ=255)                                                    aaaaGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTg                                  <  1:397485/101‑1 (MQ=255)                                                     aaaGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGa                                 >  1:922711/1‑101 (MQ=255)                                                     aaaGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGGCGTATATTTTTATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGa                                 >  1:3127368/1‑101 (MQ=255)                                                      aaGCGTAAATCTGGCATCGGCTTTCCGCGAGCGGTCGGATATTTTTTTCTTCAGAGGGTATTTTTTTTTTTTTGCTGTAGTAAAAATACACAAATTTTGAc                                >  2:1933312/1‑101 (MQ=255)                                                         cGTAAATCTGGCATCGGCTTTCCGCGAGAGGGCGCATATTTTGATCTTCCGAGGGTATTTTTTTGCTTCAGCTGTAATAAAAATATGCAAATTTTTActct                             >  2:706052/1‑101 (MQ=255)                                                         cGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGActct                             <  2:1652982/101‑1 (MQ=255)                                                         cGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGActct                             <  2:3215343/101‑1 (MQ=255)                                                          gTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCtt                            >  1:2173066/1‑101 (MQ=255)                                                           tAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTg                           <  1:681165/101‑1 (MQ=255)                                                           tAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTg                           <  1:1657747/101‑1 (MQ=255)                                                             aaTCTGGCATCGGCTTTTCGCGGGCGGGCGGATATTTTTTTTTTCAGAGGCTATTTTTTTGATTTAGCTGTAGTAAAATTACACAAATTTTTACTCTTTAg                         >  2:668050/1‑101 (MQ=255)                                                             aaTCTGGCATCGGCTTTCCGCGGGCGGGCGGATATTTTTTTTTTTAGAGGCTATTTTTTTGATTTAGCTGTAGTAAAAATAAGCAAATTTTTTCTCttttg                         >  2:3062592/1‑98 (MQ=255)                                                             aaTCTGGCATCGGCTTTCCCCGAGCGGGCGTATATTTTGTTCTTTAGAGGCTATTTTTTTGATTTAGCTGCAATAAAAATACCCAAATTTTTACTCtttat                         >  2:2587812/1‑98 (MQ=255)                                                             aaTCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAg                         <  1:322268/101‑1 (MQ=255)                                                              aTCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGt                        <  2:1357526/101‑1 (MQ=255)                                                              aTCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGt                        <  1:2771254/101‑1 (MQ=255)                                                                cTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTAt                      <  1:229627/101‑1 (MQ=255)                                                                 tGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGGTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATg                     >  1:3244448/1‑101 (MQ=255)                                                                  ggCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATTGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATGa                    >  1:914598/1‑101 (MQ=255)                                                                   gCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATGAg                   <  2:265760/101‑1 (MQ=255)                                                                    cATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATGAgg                  >  1:2528277/1‑101 (MQ=255)                                                                      tCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATGAGGtt                >  1:1359689/1‑101 (MQ=255)                                                                      tCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATGAGGtt                >  1:290022/1‑101 (MQ=255)                                                                       cGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATGAGGTTg               >  1:2554526/1‑101 (MQ=255)                                                                       cGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATGAGGTTg               <  1:2697051/101‑1 (MQ=255)                                                                            tGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATGAGGTTGTCGCa          <  2:3078351/101‑1 (MQ=255)                                                                            tGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATGAGGTTGTCGCa          >  2:433296/1‑101 (MQ=255)                                                                                 cgAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGGCTCTTGAGTATGAGGTTGTCGCAATgat     <  1:2269890/101‑3 (MQ=255)                                                                                   aGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATGAGGTTGTCGCAATgattc   >  2:1654837/1‑97 (MQ=255)                                                                                    gCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATGAGGTTGTCGCAATgattcc  <  1:2516383/101‑6 (MQ=255)                                                                                    gCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATGAGGTTGTCGCAATgattcc  <  1:1742617/101‑6 (MQ=255)                                                                                    gCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATGAGGTTGTCGCAATgattcc  <  2:1959146/101‑6 (MQ=255)                                                                                                     |                                                                                    AATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATATTTTGATCTTCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATGAGGTTGTCGCAATGTTGGT  >  CP009273/3778444‑3778627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑