| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3416618 = | 120 (0.720) | 55 (0.040) +GAATTAATTCCCC |
42/174 | 6.4 | 34.5% | intergenic (+65/+164) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon |
| ? | KX077536 | 8127 = | NA (NA) | intergenic (+52/–) | unknown/– | cat/– | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3416705‑3416618‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTT‑‑‑‑ > KX077536/8127‑8187 ||||||||||||| GTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCC > 2:1270775/1‑101 TAGGACAAACCCGCGGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGGGGGGGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCA < 1:2194643/101‑1 aaaccCCGCGGGGAGGGTTTTTGACCGTTGCGAAGCAACGGCCC‑GGGGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCAT < 1:2827233/96‑1 AAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATC > 1:537047/1‑101 AATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCA > 1:3482236/1‑101 AATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGGGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCA > 2:475062/1‑101 ATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCCGGAATTAATTCCCCAGGCATCAA > 2:66415/1‑101 CCGCCGGGAGCGGATTTGAACGTTGCGAAACAACGGCCC‑GGAGGGTGGCGGGCAGG‑CCGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAAT < 1:3744482/101‑1 GCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAA > 2:784172/1‑101 GCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAA > 1:2659539/1‑101 GGGAGCGGATTTGAACGTGGCGAAGCACCGGCCG‑GGGGGGGGGGGGGCGGG‑CCCCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAAC < 2:1288505/101‑1 GAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGA > 2:2359228/1‑101 AGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAA > 1:2373642/1‑101 AGCGGATTTAAACGTTGCGAAGCAAGGGCCC‑GGGGGGGGGGGGGCAGG‑CCGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAA < 1:2433088/101‑1 GCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAA > 1:879874/1‑101 GGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGG > 1:508624/1‑101 GATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGC > 1:101944/1‑101 GATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGC > 1:2090991/1‑101 GATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGC > 2:2375510/1‑101 GATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGC > 1:2565723/1‑101 TTTGAACGTTGCGAAGCAAGGGCCG‑GGGGGGGGGGGGGCGGG‑ACCCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTC < 2:560005/101‑1 TTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCA > 1:3040100/1‑101 TTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCA > 2:2673853/1‑101 GAACGTTGCGAAGCAACGGCCG‑GGGGGGTGGGGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGT < 1:1555399/101‑1 AACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC > 1:1348591/1‑101 ACGTCGCGAAGCAAGGGACG‑GGAGGGCGGCGGGCAAG‑CCGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCG < 1:3147371/101‑1 gttgGCGAAGCAGCGGCCC‑GGGGGGTGGGGGGCGGG‑ACCCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGA < 1:2265773/97‑1 CGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGA > 1:3629339/1‑101 GTTGCGAGGCAAGGGCCG‑GGGGGGGGGGGGGCGGA‑ACACCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAA < 1:3120996/101‑1 GTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAA > 2:1323446/1‑101 TTGCGAACCACGGGCCG‑GGGGGGGGGCGGGCAGG‑CCCCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAA < 2:614002/101‑1 caAAGCAGCGGCGG‑GGGGGGGGGGGGGCGGG‑CCCCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGAC < 2:1352366/99‑1 AGCACCGGCCG‑GGGGGGGGGGGGGCAGG‑CCCCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGG < 2:2143105/101‑1 ccccCGGCCG‑GGGGGGGGGCGGGCAGG‑CCCCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGG < 2:779239/97‑1 ccacCGGCCG‑GGGGGGTGGGGGGCGGG‑CCGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGG < 1:2490914/97‑1 agcACGGCCCGGGGGGGGGGGGGGAAGG‑CCCCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGG < 1:1046779/98‑1 GCAGCGGCCG‑GGGGGGGGGGGGGCAGG‑CCGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGG < 1:174248/101‑1 AACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCC > 2:3514638/1‑101 gCGGCCG‑GGAGGGGGGC‑GGCAGGCCCCCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCT < 2:3756869/100‑1 CGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTT > 1:1932873/1‑101 GGCCG‑GGGGGGTGGGGGGCAGG‑CCGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTT < 2:1011320/101‑1 GGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTT > 2:1365778/1‑101 GGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTT > 1:1757986/1‑101 CC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGT > 1:3140737/1‑101 GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTT > 1:3878428/1‑101 AGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTA > 1:1716561/1‑101 GGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATC > 1:2251682/1‑101 ggGGCGGGCAGC‑CCCCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCT < 2:3751248/99‑1 ggGGGCACG‑CCGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGATTGGGCCTTTCGTTTTATCTGTT < 1:3357646/99‑1 GCGGGCAGG‑CCCCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTT < 2:2849787/101‑1 GGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGT > 1:1299310/1‑101 GGGCAGC‑CCGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGT < 2:1838878/101‑1 GGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTT < 1:2308389/101‑1 GGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTT > 1:1851539/1‑101 GCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTt < 2:2251682/101‑2 GG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTtgtc < 2:192995/101‑5 TTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCT < 1:614780/53‑1 CAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTC < 2:2748199/47‑1 CAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTC > 1:2748199/1‑47 ||||||||||||| GTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGTGGCGGGCAGG‑ACGCCCGCCATAAACTGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3416705‑3416618‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTT‑‑‑‑ > KX077536/8127‑8187 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |