Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,617,8620TG23.7% 361.4 / 21.5 132V487G (GTA→GGA) ppkpolyphosphate kinase, component of RNA degradosome
Reads supporting (aligned to +/- strand):  ref base T (22/78);  new base G (31/0);  total (54/78)
Fisher's exact test for biased strand distribution p-value = 4.19e-16
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 150 total aligned reads displayed.

CACATCGGGACCGGGAACTTTAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCTATTGTATGAAATGGTGGACCG  >  CP009273/2617762‑2617961
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cacaTCGGGACCGGGAACTTTAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGt                                                                                                     <  2:3201620/101‑1 (MQ=255)
 acaTCGGGACCGGGAACTTTAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTa                                                                                                    <  1:337421/101‑1 (MQ=255)
  caTCGGGACCGGGAACTTTAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTAt                                                                                                   <  2:686322/101‑1 (MQ=255)
   aTCGGGACCGGGAACTTTAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTAtt                                                                                                  <  2:3669603/101‑1 (MQ=255)
     cGGGACCGGGAACTTTAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTa                                                                                                <  2:691160/101‑1 (MQ=255)
       ggACCGGGAACTTTAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAAc                                                                                              <  2:3664284/101‑1 (MQ=255)
         aCCGGGAACTTTAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACtt                                                                                            <  2:1553729/101‑1 (MQ=255)
         aCCGGGAACTTTAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAAAtt                                                                                            >  2:1845728/1‑101 (MQ=255)
           cGGGAACTTTAACGAAAAACCCCCCCGCCTTTATACTGCCTTTTCGTTGTTAACGGCGAATGC‑CCCCTCACCAACCAAAGAACGGCGGGAGTTTAACtttt                                                                                          >  2:2587846/1‑100 (MQ=255)
            gggAACTTTAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTAt                                                                                         >  2:1545410/1‑101 (MQ=255)
            gggAACTTTAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGAAATTAACttttt                                                                                         >  2:3348578/1‑99 (MQ=255)
             ggAACTTTAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTAtt                                                                                        <  1:2008342/101‑1 (MQ=255)
              gAACTTTAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTATTg                                                                                       >  1:3471812/1‑101 (MQ=255)
                 cTTTAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGaaa                                                                                    <  1:2500947/101‑1 (MQ=255)
                 cTTTAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGGTTTAAATTTAttttaa                                                                                    >  2:2914281/1‑97 (MQ=255)
                  tttAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGaaaa                                                                                   >  1:3356464/1‑101 (MQ=255)
                   ttAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAAc                                                                                  <  1:3152492/101‑1 (MQ=255)
                      aCGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCa                                                                               <  2:2895355/101‑1 (MQ=255)
                      aCGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCa                                                                               <  2:3555083/101‑1 (MQ=255)
                       cGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCAt                                                                              >  1:1918601/1‑101 (MQ=255)
                        gAAAACACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATa                                                                             <  1:2470182/101‑1 (MQ=255)
                        gAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTTTTTAAAAACCATa                                                                             >  2:2769507/1‑101 (MQ=255)
                          aaaaaCCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATAcc                                                                           <  1:669914/101‑1 (MQ=255)
                          aaaaaCCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATAcc                                                                           <  1:1481306/101‑1 (MQ=255)
                          aaaaaCCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTTACTTTATTTAAAACCCATAcc                                                                           >  2:1466758/1‑101 (MQ=255)
                           aaaaCCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCg                                                                          <  2:3744789/101‑1 (MQ=255)
                            aaaCCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGt                                                                         <  2:3357451/101‑1 (MQ=255)
                              aCCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTcc                                                                       <  1:3900432/101‑1 (MQ=255)
                               ccGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCg                                                                      <  1:432620/101‑1 (MQ=255)
                               ccGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCg                                                                      <  1:2205446/101‑1 (MQ=255)
                               ccGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTATTTAAAACCCATACCGTCCg                                                                      >  1:1990164/1‑101 (MQ=255)
                               ccGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTATTTAAAAACCATACCGTCCg                                                                      >  2:2147278/1‑101 (MQ=255)
                               ccGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGCATTTAACTTTATTGAAAACCCAAACCGTCCg                                                                      >  1:2242269/1‑101 (MQ=255)
                                 gcgcgTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGt                                                                    <  2:1702035/101‑1 (MQ=255)
                                  cgcgTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTg                                                                   <  2:2059950/101‑1 (MQ=255)
                                   gcgTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGa                                                                  >  2:3307776/1‑101 (MQ=255)
                                   gcgTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTATTGAAAACCCCTACCGTcccggga                                                                  >  2:1222500/1‑96 (MQ=255)
                                    cgTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTTACTTTTTTTAAAACCCATACCGTCCgggggc                                                                 >  2:2790294/1‑97 (MQ=255)
                                      tCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTTTTTAAAACCCATACCCTCCGGGGACAt                                                               >  2:481664/1‑101 (MQ=255)
                                        tttATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACAttt                                                             <  1:2961722/101‑1 (MQ=255)
                                         ttATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTg                                                            <  2:2564502/101‑1 (MQ=255)
                                          tataCTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTATTTAAAACCCATACCGTCCGGCGACATTTGa                                                           >  1:2420305/1‑101 (MQ=255)
                                           ataCTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGat                                                          <  2:1853961/101‑1 (MQ=255)
                                            taCTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTTACTTTTTTTAAAACCCATACCGTCCGGGGACATTTTatt                                                         >  2:220584/1‑101 (MQ=255)
                                             aCTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGGGACATTTGatta                                                        >  1:1421363/1‑101 (MQ=255)
                                             aCTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTTACTTTATTTAAAAACCATACCGTCCCGGGACATTTGatta                                                        >  2:1399954/1‑101 (MQ=255)
                                             aCTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGatta                                                        >  1:1021482/1‑101 (MQ=255)
                                               tGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGattatt                                                      <  2:3793931/101‑1 (MQ=255)
                                               tGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGattatt                                                      >  1:186427/1‑101 (MQ=255)
                                               tGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTTACTTTTTTAAAAACCCAAACCGTCCGGGGGAATTTGattatt                                                      >  2:489221/1‑101 (MQ=255)
                                               tGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTTTTTAAAACCCATACCCTCCCGGGGCATTTGattatt                                                      >  2:2700788/1‑101 (MQ=255)
                                                gACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTAttt                                                     <  1:1260920/101‑1 (MQ=255)
                                                  cTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTaa                                                   <  2:1773175/101‑1 (MQ=255)
                                                    aTTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATg                                                 >  1:3059491/1‑101 (MQ=255)
                                                     ttCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATgg                                                <  1:1881847/101‑1 (MQ=255)
                                                     ttCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTTTTTAAAAACCATACCGTCCGGGGACAATTGATTATTTAATgg                                                >  1:700711/1‑101 (MQ=255)
                                                      tCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAGCCCATACCGTCCGGTGACATTTGATTATTTAATGGt                                               <  1:1245792/101‑1 (MQ=255)
                                                      tCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGt                                               <  2:2160618/101‑1 (MQ=255)
                                                       cGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTa                                              <  2:3597925/101‑1 (MQ=255)
                                                       cGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTa                                              >  1:1092395/1‑101 (MQ=255)
                                                       cGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTa                                              <  1:1545410/101‑1 (MQ=255)
                                                       cGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAATTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTTAAGGTa                                              >  1:2362656/1‑101 (MQ=255)
                                                       cGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTATTGAAAAACCAAACCGCCCGGTGAGCTTTGATTTTTTaaaagta                                              >  1:2117048/1‑96 (MQ=255)
                                                        gTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTAt                                             >  1:1384058/1‑101 (MQ=255)
                                                         ttGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTATTTAAAACCCATACCGTCCGGTGACATTTGATTATTTTATGGTAtt                                            >  2:81051/1‑100 (MQ=255)
                                                          tGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATcg                                           <  1:2903120/101‑1 (MQ=255)
                                                             tGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATcgccg                                        <  1:1297366/101‑1 (MQ=255)
                                                             tGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATcgccg                                        <  1:3276038/101‑1 (MQ=255)
                                                             tGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATcgccg                                        >  1:879258/1‑101 (MQ=255)
                                                             tGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATcgccg                                        >  1:3506291/1‑101 (MQ=255)
                                                             tGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATcgccg                                        >  1:3617161/1‑101 (MQ=255)
                                                                 cgccgATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCaaa                                    <  2:872863/101‑1 (MQ=255)
                                                                 cgccgATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCaaa                                    <  2:2208118/101‑1 (MQ=255)
                                                                 cgccgATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCaaa                                    <  1:1553767/101‑1 (MQ=255)
                                                                   ccgATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTTAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAAc                                  >  1:3829792/1‑101 (MQ=255)
                                                                    cgATGCGCGCATCACCAA‑CGAAGTACGGCGGGGATTTAACTTTATTGAAAACCCATACCGTCCGGGGACATTTGATTATTTAATGGTATCGCCGCAAAACt                                 >  2:3251612/1‑101 (MQ=255)
                                                                       tGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTccc                              >  1:3674200/1‑101 (MQ=255)
                                                                       tGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTccc                              <  1:261552/101‑1 (MQ=255)
                                                                        gcgcgcATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCccg                             <  2:3632739/101‑1 (MQ=255)
                                                                        gcgcgcATCACCAA‑CGAAGTACGGCGGGAATTTAACTTTATTTAAAACCCATTCCCTCCGCGGGCAATTTATTATTTAATAGCATTGCGCCATAACTctca                             >  2:2630177/1‑98 (MQ=255)
                                                                          gcgcATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCccgcc                           <  2:2462262/101‑1 (MQ=255)
                                                                          gcgcATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCccgcc                           <  2:1008054/101‑1 (MQ=255)
                                                                              aTCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCt                       <  2:3831155/101‑1 (MQ=255)
                                                                                cACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCTAt                     >  1:263664/1‑101 (MQ=255)
                                                                                 aCCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCTAtn                    <  1:1845728/101‑2 (MQ=255)
                                                                                  ccAA‑CGAAGTACGGCGGGTATTTTAATTTATTGAAAACCCATACCGTCCGGTGACATTTTATTTTTTAATGGGATCGCCGCAAAACTCCCGCCGCCTAttt                   >  2:1185101/1‑100 (MQ=255)
                                                                                  ccAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCTATTg                   <  1:3216502/101‑1 (MQ=255)
                                                                                    aa‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCTATTGTa                 >  1:563224/1‑101 (MQ=255)
                                                                                        gAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCCTCCGGGGGCATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCCATTGTATGa              >  2:3481982/1‑101 (MQ=255)
                                                                                        gAAGTACGGCGGGTATTTAACTTTATTGAAAACCCAAACCGTCCGGGGACATTTGATTATTTTATGGTATCGCCGCAAAACTCCCGCCGCCTATTGTATGa              >  2:2948804/1‑101 (MQ=255)
                                                                                             aCGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCTATTGTATGAAAtgg         >  2:1785950/1‑101 (MQ=255)
                                                                                              cggcggGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCTATTGTATGAAAtggt        <  2:2727018/101‑1 (MQ=255)
                                                                                               ggcggGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCTATTGTATGAAAtggtg       <  1:2156478/101‑1 (MQ=255)
                                                                                                gcggGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCTATTGTATGAAAtggtgg      <  1:3166257/101‑1 (MQ=255)
                                                                                                gcggGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCTATTGTATGAAAtggtgg      <  2:2963284/101‑1 (MQ=255)
                                                                                                 cggGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCTATTGTATGAAATGGTGGa     >  2:2042075/1‑101 (MQ=255)
                                                                                                  gggTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCTATTGTATGAAATGGTGGAc    <  1:1486635/101‑1 (MQ=255)
                                                                                                   ggTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCTATTGTATGAAATGGTGGAcc   <  2:1734184/101‑1 (MQ=255)
                                                                                                   ggTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCTATTGTATGAAATGGTGGAcc   <  1:1349096/101‑1 (MQ=255)
                                                                                                    gTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCTATTGTATGAAATGGTGGACcg  <  1:2766063/101‑1 (MQ=255)
                                                                                                     |                                                                                                   
CACATCGGGACCGGGAACTTTAACGAAAAAACCGCGCGTCTTTATACTGACTATTCGTTGCTGACCGCCGATGCGCGCATCACCAA‑CGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGATTATTTAATGGTATCGCCGCAAAACTCCCGCCGCCTATTGTATGAAATGGTGGACCG  >  CP009273/2617762‑2617961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑