| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,086,494 | 0 | T | G | 20.4% | 365.8 / 18.7 | 133 | Y102S (TAC→TCC) | rhaM | L‑rhamnose mutarotase |
| Reads supporting (aligned to +/- strand): ref base T (42/63); new base G (27/0); total (70/63) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.23e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 141 total aligned reads displayed.
ATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCT > CP009273/4086395‑4086594 | atatAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTa < 2:3044606/101‑1 (MQ=255) ataACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTaaa > 1:1115921/1‑101 (MQ=255) ataACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTaaa > 2:960472/1‑101 (MQ=255) taACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTaaaa < 1:899743/101‑1 (MQ=255) taACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTaaaa > 2:3889095/1‑101 (MQ=255) taACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGaaaa > 1:479797/1‑101 (MQ=255) taACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGaaaa > 2:1790588/1‑101 (MQ=255) aCTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAaca > 1:2137841/1‑101 (MQ=255) cTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAacac < 2:140058/101‑1 (MQ=255) ttACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAAAAct > 2:396928/1‑101 (MQ=255) tACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACActt < 2:3010009/101‑1 (MQ=255) tACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACActt < 2:286770/101‑1 (MQ=255) tACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACActt < 2:3290810/101‑1 (MQ=255) tACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACActt < 2:3730508/101‑1 (MQ=255) aCCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACActtc > 1:330341/1‑101 (MQ=255) aCCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAAAActtt > 2:56607/1‑100 (MQ=255) ccGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACActtct > 2:551509/1‑101 (MQ=255) ccGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACActtct < 1:1413259/101‑1 (MQ=255) ccGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAAAActtct > 2:1029245/1‑101 (MQ=255) ccGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGCAAAAAActtct > 1:3468712/1‑101 (MQ=255) cGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACCcttctt < 2:240486/101‑1 (MQ=255) cGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACActtctt < 2:976288/101‑1 (MQ=255) cGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACActtctt > 1:787487/1‑101 (MQ=255) cGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACActtctt < 1:2753766/101‑1 (MQ=255) cGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGGAAAAActtctt > 2:1330834/1‑101 (MQ=255) cGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAACActtctt > 2:3394224/1‑101 (MQ=255) cGGGAGATGTAATATGTTGAATTTTTCAATTCGAACTTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAACActtttt > 2:1925080/1‑101 (MQ=255) gggAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTg > 1:1749618/1‑101 (MQ=255) gagaTGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCa < 1:3295096/101‑1 (MQ=255) gaTGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGc < 2:324705/101‑1 (MQ=255) tGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTc < 2:2632165/101‑1 (MQ=255) tGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAAAACTTCTTGCAGCTc > 2:177341/1‑101 (MQ=255) gTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAAAAATTCTTGCAGCCCg > 1:3594835/1‑101 (MQ=255) tAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGc > 1:2278444/1‑101 (MQ=255) aaTATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCt > 1:2197990/1‑101 (MQ=255) atatGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTa < 1:2871906/101‑1 (MQ=255) atatGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAAAAATTCTTGCAGCTCGCTa > 2:2765153/1‑101 (MQ=255) atGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACt < 1:3665244/101‑1 (MQ=255) tGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAACACTTCTTGCAGCTCGCTACTc > 2:638823/1‑101 (MQ=255) aaTTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCgg < 2:852275/101‑1 (MQ=255) aTTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCggg < 1:2099675/101‑1 (MQ=255) aTTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCcgg > 1:3712906/1‑101 (MQ=255) tttttCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGc < 2:461712/101‑1 (MQ=255) ttCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGt < 1:2454381/101‑1 (MQ=255) ttCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCCGGCTGt > 1:3678591/1‑101 (MQ=255) cAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTa > 1:1499701/1‑101 (MQ=255) cAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAAAAATTCTTGCAGCTCGCTAATCACCCGGCTGttt > 2:662341/1‑100 (MQ=255) aaaTCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTAt > 1:2761152/1‑101 (MQ=255) aTCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATcc < 1:1148744/101‑1 (MQ=255) aTCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAAAACTTCTTGCAGCTCGCTACTCACCCGGCTGTTATcc > 2:2875958/1‑101 (MQ=255) cGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCgg < 2:1457890/101‑1 (MQ=255) cGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAAAACTTCTTGCAGCTCGCTACTCACCCGGCTGTTATcccg > 2:3876656/1‑99 (MQ=255) gAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAACACTTCTTTCAGCTCGCCACTCCCCGGGCTGTTATTCggg > 2:2286650/1‑101 (MQ=255) aaaTTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGt < 1:1116726/101‑1 (MQ=255) tttAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAg < 2:2188693/101‑1 (MQ=255) aaTATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGc < 2:1958701/101‑1 (MQ=255) aaTATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCCGGCTGTTATCCGGGTTAGCGGGc > 1:3034406/1‑101 (MQ=255) atatTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCa > 1:3011775/1‑101 (MQ=255) atatTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCa > 1:3674715/1‑101 (MQ=255) tatTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAACACTTCTTGCAGCTCGCTACCCACCGGGCTGTTATCCGGGGTAGCGGGCAt > 2:1798323/1‑101 (MQ=255) atTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATa < 2:3809895/101‑1 (MQ=255) atTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATa < 2:3411327/101‑1 (MQ=255) atTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATa > 2:2348020/1‑101 (MQ=255) ttGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATaa < 2:3420437/101‑1 (MQ=255) ttGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCCGGCTGTTATTCGGGTTAGCGGGCATaa > 2:1675946/1‑101 (MQ=255) tgtgCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAACACCTCTTGCAGCTCGCTACTCCCCCGGCCGTTATCCGGGTTAGCGGGCATAAc > 1:2987661/1‑101 (MQ=255) tgCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACAt > 1:451589/1‑101 (MQ=255) tgCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAACACTTCTTGCAGCCCGCTACTCACCCGGCCGTTATCCGGGGTAGCGGGGATAAAAt > 2:867966/1‑101 (MQ=255) tgCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAAAACCTCTTTCAGCTCGCCACTCACCGCGCTGTTATCCCGGTTAACGGGCATAAAAt > 2:3092196/1‑101 (MQ=255) ggAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGt > 1:1389944/1‑101 (MQ=255) gAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTc < 1:3146924/101‑1 (MQ=255) gAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTc < 1:960472/101‑1 (MQ=255) gAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTc > 1:2661015/1‑101 (MQ=255) ggCATCTCTGGCACATTGGGCAATTACGGCAGGGAAAACACTTCTTTCAGCTCGCTACTCACCCGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCat > 2:2492267/1‑101 (MQ=255) gCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCata < 1:2364415/101‑1 (MQ=255) cATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTTCAGCTCGCTACTCACCGGGATGTTATCCGGGTTAGCGGGCATAACATCGGTCatat > 1:167810/1‑101 (MQ=255) cATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCatat < 2:1146053/101‑1 (MQ=255) cATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCatat > 1:3920412/1‑101 (MQ=255) cATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCatat > 1:490381/1‑101 (MQ=255) aTCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCatata > 1:923217/1‑101 (MQ=255) aTCTCTGGCACATTGGGCAATTACGGCAGGGAAAAAACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCatata > 2:3706503/1‑101 (MQ=255) aTCTCTGGCACATTGGGCAATTACGGCAGGGAAAAAACTTCTTGCAGCTCGCTACTCACCCGGCTGTTATCCGGGTTAGCGGGGATAACATCGGGCatata > 2:1421252/1‑101 (MQ=255) tctGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATAttt > 1:692984/1‑101 (MQ=255) ctGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATATTTc > 1:1475504/1‑101 (MQ=255) tGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCCGGTATCCCGGGTGGGGGGCACAACAACGGGCATATAttttc > 2:755180/1‑99 (MQ=255) ggCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATATTTcca < 2:3926627/101‑1 (MQ=255) ggCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATATTTcca < 2:3468712/101‑1 (MQ=255) acaTTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATATTTccacca < 2:3454767/101‑1 (MQ=255) caTTGGGCAATTACGGCAGGTAAAACACTTCTTTCAAATCCCTCCTCCACGGGCTGGTATCCGCGGTAGAGGGCATAAAATCGGTCCTTTATTTGCACCaa > 2:3842301/1‑101 (MQ=255) gggCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGGTAGCGGGCATAACATCGGTCATATATTTCCACCAACGtt > 1:2565498/1‑101 (MQ=255) aaTTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCa < 2:1370108/101‑1 (MQ=255) aaTTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCa < 2:565346/101‑1 (MQ=255) ttACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCCCCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCaaa < 2:721642/101‑1 (MQ=255) atACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCaaa < 1:1891582/100‑1 (MQ=255) aCGGCAGGTAAAACACTTCTTGCAGCTCGCTCCTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACa < 2:2367633/101‑1 (MQ=255) aCGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACa < 2:722678/101‑1 (MQ=255) cGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACAt < 1:1790588/101‑1 (MQ=255) cGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACAt > 1:8496/1‑101 (MQ=255) ggCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATc > 1:3174782/1‑101 (MQ=255) ggCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATc > 1:2676546/1‑101 (MQ=255) | ATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCGGAGGCATCTCTGGCACATTGGGCAATTACGGCAGGTAAAACACTTCTTGCAGCTCGCTACTCACCGGGCTGTTATCCGGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCT > CP009273/4086395‑4086594 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |