New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 354947	37 (1.080)	5 (0.160)	5/294	2.1	13.1%	coding (438/660 nt)	cynT	carbonic anhydrase
	?	CP009273	= 355075	33 (1.060)					coding (566/660 nt)	cynT	carbonic anhydrase
Rejected: Frequency below/above cutoff threshold.

CCCTTCCTACGGGCCGGAACCCGGTGGCGTTTCTGCTTCGGTGGAGTATGCCGTCGCTGCGCTTCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGT  >  CP009273/354710‑355209                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                       tcattccgccGGGCCGGGACCCGTTGGCGTTTCTGTTTCGGTGGGGTTTGCCGTCGCTGCGCTTCGGGTTGCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATCTGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCt                                                                                                                                                                                                                                    <  2:218759/265‑1 (MQ=255)  ccTTCCTACGGGCCGGAACCCGGTGGCGTTTCTGCTTCGGTGGAGTATGCCGTCGCTGCGCTTCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCCGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCCCTGGCTGCGTTTTGCCGATTCAGCCCGCGTTGTTAATGACGCGCGCCCGCATTCCGATTTACCGGCAAAATCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAATTGGCTa                                                                                                                                                                                                                                   >  1:218761/1‑274 (MQ=255)                                      tCGGTGGAGTATGCCGTCGCTGCGCTTCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcgcaccg                                                                                                                                                                                               <  1:282980‑M1/274‑74 (MQ=255)                                                 tGCTGTTGCCGCGTTTCGGTTTTCTGCCATTGTGATTTGTGGTCATCCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACGGGCTGCGTTCTGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTAGCGCTCGAAGAGGGGCGGa                                                                                                                                                                                   <  1:547472/275‑1 (MQ=255)                                                          tGCGCTTGTGGTATCTGACATTGTGATTTGGGGGCATTCTAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCAGGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTg                                                                                                                                                                           <  1:31321/274‑1 (MQ=255)                                                           gcgcTTCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCATTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGAt                                                                                                                                                                                                                                                                   >  2:113845/1‑185 (MQ=255)                                                               ttCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTa                                                                                                                                                                                                                                                               <  1:113846/185‑1 (MQ=255)                                                                              ttGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgct                                                                                                                                                                                                                                                             >  1:571614‑M1/1‑161 (MQ=255)                                                                               tgtgATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCAt                                                                                                                                                                                                                                                 >  1:493674/1‑183 (MQ=255)                                                                                 tgATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCATGCACGGCTGGGTCTAAGACATTGaa                                                                                                                                                   >  1:413263/1‑275 (MQ=255)                                                                                  gATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgctttca                                                                                                                                                                                                                                                         <  2:571605‑M1/172‑16 (MQ=255)                                                                                   aTTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCCTCCCGCGTCGTTACTGAGGCGCGCCCGCCTTCCGCTTTACCGTCCAAAGCTGCGGCGAt                                                                                                                                                                                                                                                                   >  2:295366/1‑161 (MQ=255)                                                                                   aTTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCt                                                                                                                                                                                                                                             <  2:493667/183‑1 (MQ=255)                                                                                       gtgGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCAGGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTa                                                                                                                                                                                                                                                               <  1:295370/161‑1 (MQ=255)                                                                                             aTTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGa                                                                                                                                                                                                                                                                    >  2:236384/1‑150 (MQ=255)                                                                                                 cAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGt                                                                                                                                                                                                                                                                <  1:236387/150‑1 (MQ=255)                                                                                                            cgATGACCGCCATTGCCAGCTGTCAGTTCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCt                                                                                                                                                                                                                                             >  1:411607/1‑158 (MQ=255)                                                                                                               tGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTg                                                                                                                                                                                                                                               >  2:511595/1‑153 (MQ=255)                                                                                                                   cGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGTCGATGGTACGTGAAAACGTCATTGCTCa                                                                                                                                                                                                                                           <  1:511602/153‑1 (MQ=255)                                                                                                                           ccAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAgggg                                                                                                                                                                                       >  2:167820/1‑197 (MQ=255)                                                                                                                               cTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCTATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGa                                                                                                                                                                                   <  1:167821/197‑1 (MQ=255)                                                                                                                                                       tgccGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGGGCTCGAAGAGGGGCGGATCGCCCTGCANGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGttt                                                                             >  1:525900/1‑275 (MQ=255)                                                                                                                                                         ccGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGAGTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGCCATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGATTGCTGCAATGGCCGCTAACCCTCGCGtgtg                                                                            >  1:14622/1‑274 (MQ=255)                                                                                                                                                                   cTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcg                                                                                                                                                                                                               >  1:71376‑M1/1‑76 (MQ=255)                                                                                                                                                                      gCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGaaa                                                                                                                                                  >  1:267997/1‑191 (MQ=255)                                                                                                                                                                       cTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgctttcaaggtcgtagacccagccgtgcagggcgatccgcccctcttcgagcg                                                                                                                                                                                                           <  2:71375‑M1/133‑62 (MQ=255)                                                                                                                                                                        tGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGcc                                                                                                                                                                                                        >  2:182062/1‑135 (MQ=255)                                                                                                                                                                          cGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGa                                                                                                                                                                                                                                                                    >  1:161966/1‑73 (MQ=255)                                                                                                                                                                          cGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGc                                                                                                                                                                          >  1:371650/1‑163 (MQ=255)                                                                                                                                                                          cGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCgg                                                                                                                                              <  2:267993/191‑1 (MQ=255)                                                                                                                                                                            ttATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGgc                                                                                                                                                                                                    <  1:182064/135‑1 (MQ=255)                                                                                                                                                                              aTGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGt                                                                                                                                                                                                                                                                <  2:161965/73‑1 (MQ=255)                                                                                                                                                                              aTGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACgg                                                                                                                                                                      <  2:371646/163‑1 (MQ=255)                                                                                                                                                                                                           gcgcgcCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACg                                                                                                                                                                                                                                                             >  2:266208/1‑47 (MQ=255)                                                                                                                                                                                                               gcCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGaa                                                                                                                                                                                                                                                         <  1:266212/47‑1 (MQ=255)                                                                                                                                                                                                                         cGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCGCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTccacc            <  1:169272/274‑1 (MQ=255)                                                                                                                                                                                                                               aCCGTCAAAAGGTGCGGCGATGTTACGTGAAATCGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCATGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGAtt      <  1:311883/274‑1 (MQ=255)                                                                                                                                                                                                                                 cGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCAc                                                                                                                                                                        >  1:27673/1‑110 (MQ=255)                                                                                                                                                                                                                                  gTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGCAGTTCCACCATGATTCAGt  <  1:544558/275‑1 (MQ=255)                                                                                                                                                                                                                                     aaaaGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCt                                                                                                                                                                    <  2:27672/110‑1 (MQ=255)                                                                                                                                                                                                                                             cggcgATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGc                                                                                                                                                                                                                             >  1:544217/1‑45 (MQ=255)                                                                                                                                                                                                                                             cggcgATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTcatccatc                                                                                                                                                                                                                >  2:458701/1‑58 (MQ=255)                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                       CCCTTCCTACGGGCCGGAACCCGGTGGCGTTTCTGCTTCGGTGGAGTATGCCGTCGCTGCGCTTCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGT  >  CP009273/354710‑355209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.