New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3287192 =	36 (1.050)	4 (0.120)	4/308	2.4	13.3%	coding (434/2037 nt)	lpoA	OM lipoprotein stimulator of MrcA transpeptidase
	?	CP009273	3287375 =	18 (0.550)					coding (617/2037 nt)	lpoA	OM lipoprotein stimulator of MrcA transpeptidase
Rejected: Frequency below/above cutoff threshold.

ACTGGCAATTACTCGCCATTCGTGCACTGGTGAAAGAAGGTAAAACCGGGCAGGCGGTTGAGTTGTTTAACCAACTACCGCAAGAACTGAACGATGCTCAGCGTCGCGAGAAAACACTGCTGGCGGTAGAGATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACG‑CTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGTTTGATAACCGTAACGATCCCGA  >  CP009273/3286949‑3287414                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                aCTGGCAATTACTCGCCATTCGTGCACTGGTGAAAGAAGGTAAAACCGGGCAGGCGGTTGAGTTGTTTAACCAACTACCGCAAGAACTGAACGATGCTCAGCGTCGCGAGAAAACACTGCTGGCGGTAGAGATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCACGAGCGTGACATGAAGGAAAAAAGCGATGCCAGCCATGGGCGTCCTACCATGAATTTAc                                                                                                                                                                                                    >  2:492643/1‑273 (MQ=255)           aCTCTCCATTTATGCATGGGTGAAAGAAGGTTAAACCGGGCAGTCGGTTGAGTTTTTTAACCAACTACCGCAAGAACTGAACGATGCTCAGCGTCGCGAGAAAACACTGCTTGCGGTAGAGANTCAACTGGCGCACAAAGATTTTGCTGTCGCGCAAACCTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGTGCGTCCTTCCATTGATTTACTGCGCGCGTTaa                                                                                                                                                                                        <  1:573900/275‑1 (MQ=255)                                   agaagGTAAAACCGGGCAGGCGGTTGAGTTGTTTAACCAACTACCGCAAGAACTGAACGATGCTCAGCGTCGCGAGAAAACACTGCTGGCGGTAGAGATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGAAAAAATCGATGCCAGCAAGGGGCGTCATTCCATTGATTTACCGAGCTCGTTAATTGCTCAGGAAANactgctggcc                                                                                                                                                                 >  2:72030/1‑270 (MQ=255)                                      agGTAAAACCGGGCAGGCGGTTGAGTTGTTTAACCAACTACCGCAAGAACTGAACGATGCTCAGCGTCGCGAGAAAACACTGCTGGCGGTAGAGATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCACAGGAACCGCTGCTTGGCGCga                                                                                                                                                             >  1:103231/1‑275 (MQ=255)                                                                 cagtggcaacagcagggcgattttgttggtcgaggctggtttaaacgcttttacgttaaccaactgcgttggcagcattttcgcgcccggattgttcggataacgtttctgccagtcggcgatcccggctttcatcatgtcgggatcgttacggttatcaaaccagacgcgctgcagatCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGcgcg                                                                                                                                                              <  2:155433‑M1/68‑1 (MQ=255)                                                                     ggcaacagcagggcgattttgttggtcgaggctggtttaaacgcttttacgttaaccaactgcgttggcagcattttcgcgcccggattgttcggataacgtttctgccagtcggcgatcccggctttcatcatgtcgggatcgttacggttatcaaaccagacgcgctgcagatCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCgaaag                                                                                                                                                          >  1:155434‑M1/176‑247 (MQ=255)                                                                         aaCTACCGCAAAATCTGAACGATGCTCAGCGTCGCGAGAAAACACGGCTGGCTGTAGAGATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAg                                                                                                                          <  1:72031/275‑1 (MQ=255)                                                                               cGCAAGAACTGAACGATGCTCAGCGTCGCGAGAAAACACTGCTGGCGGTAGAGATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGAGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGGTAATTGCTAAGGAACAGCTGCTTGGCGCGAAAGAAAAACAGCAGAATCTTGATGCGACCGGACAGGCGct                                                                                                                     >  2:591321/1‑274 (MQ=255)                                                                                     aaCTGAACGATGCTCAGCGTCGCGAGAAAACACTGCTGGCGGTAGAGATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTc                                                                                                                                                                                                                   >  1:542338/1‑174 (MQ=255)                                                                                       cTGAACGATGCTCAGCGTCGCGAGAAAACACTGCTGGCGGTATGGATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCCGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCAt                                                                                                            <  1:430507/275‑1 (MQ=255)                                                                                        tGAACGATGCTCAGCGTCGCGAGAAAACACTGCTGGCGGTAGAGATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTNACTGCGCGNGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCAACCTGGCAGGCGCTCTCCTCCATg                                                                                                           >  1:459842/1‑275 (MQ=255)                                                                                         gAACGATGCTCAGCGTCGCGAGAAAACACTGCTGGCGGTAGAGATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTc                                                                                                                                                                                                               <  2:542329/174‑1 (MQ=255)                                                                                                gCTCAGCGTCGCGAGAAAACACTGCTGGCGGTAGAGATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTaa                                                                                                                                                                                                    >  1:369720/1‑177 (MQ=255)                                                                                                   gagtgacgcgACAAAACACGGCTTGCGGTAGAGATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAATACTTGCTTGCGAAAACCACACCTGCCGATGTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCTGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACa                                                                                                <  1:591330/269‑1 (MQ=255)                                                                                                    aGCGTCGCGAGAAAACACTGCTGGCGGTAGAGATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTgcg                                                                                                                                                                                                <  2:369716/178‑1 (MQ=255)                                                                                                             agaAAACACTGCTGGCGGTAGAGATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCGACAATCGCTGCCAGCCAGGGGCg                                                                                                                                                                                                                     <  1:474014/148‑1 (MQ=255)                                                                                                                           gCGGTAGAGATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACG‑CTGGTGATCAACg                                                                        >  1:69997/1‑274 (MQ=255)                                                                                                                             gttAGAGAATAAGTTGGAGAAAAAAGATTTTGCTGGCGCGAAAAACTTGCTGGCGAAAATAATCCCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGAAAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTATCCTCCATGACTCAGGAACAGGCGAGTACG‑CTGGTGATCAACGcc                                                                      <  1:557798/272‑1 (MQ=255)                                                                                                                                       aaaaTGGCCANGAAGGAGTTTGCGGCCGCCCAAAACTTCCTGGCGAAAATCCCACCTGCCGATTTGGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACG‑CTGGTGATCAACGCCGACGAAAata                                                            <  2:69996/274‑1 (MQ=255)                                                                                                                                          agcattttcgcgcccggattgttcggataacgtttctgccagtcggcgatcccggctttcatcatgtcgggatcgttacggttatcaaaccagacgcgctgcagatc                                                                                                                                                                                                                                 <  1:154093‑M1/1‑1 (MQ=255)                                                                                                                                             gcgcAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTGGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCCCCATGACTCAGGAACCGGCGAATACG‑CTGGTGATCACCGCCGCCGACAatctgtctc                                                      >  2:277373/1‑267 (MQ=255)                                                                                                                                             gcgcAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACG‑CTGGTGATCAACGCCGACGAAAATATTCTGc                                                      >  1:214890/1‑274 (MQ=255)                                                                                                                                             gcgcAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAAAATTGATGCAAACTGACAAGCGCGCTCCTCAACAACCAAGGAACAGGCGAAAACGCCTGGT‑ATCACCGCCCACCAAAatactat                                                        >  2:4736/1‑268 (MQ=255)                                                                                                                                              ttttcgcgcccggattgttcggataacgtttctgccagtcggcgatcccggctttcatcatgtcgggatcgttacggttatcaaaccagacgcgctgcagatccagc                                                                                                                                                                                                                             >  2:154092‑M1/103‑107 (MQ=255)                                                                                                                                                 aGAAAGATTTTGCTGGCGCGCAATACTTGCTGTCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACG‑CTGGTGATCAACGCCGACGAAAATATTCTGCaa                                                    <  1:4736/272‑1 (MQ=255)                                                                                                                                                 aGAAAGATTTTGATGGGGAGCAAAACTGGGTGGCGAAAATCACACCTGCCGATTTGGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCGTCGATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACG‑CTGGTGATCAACg                                                                        <  1:277377/252‑1 (MQ=255)                                                                                                                                                   aaaGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGATCATGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAata                                                                                                                                           >  1:590035/1‑184 (MQ=255)                                                                                                                                                       aTTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGa                                                                                                                                       <  2:590026/184‑1 (MQ=255)                                                                                                                                                                 cgcgcAAAACTTGCTGGCGAAAATGACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATgcaagcca                                                                                                                                                                                                                           >  2:318488/1‑90 (MQ=255)                                                                                                                                                                     cAAAACTTGCTGGCGAAAATGACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAgggg                                                                                                                                                                                                                       <  1:318492/90‑1 (MQ=255)                                                                                                                                                                                    aaaaTCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCgaaagaaa                                                                                                                                                       >  2:448831/1‑139 (MQ=255)                                                                                                                                                                                        tCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTTCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAAca                                                                                                                                                   <  1:448836/139‑1 (MQ=255)                                                                                                                                                                                                gCCGATTTAGAACAAAGCCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGTAACAGGCGAATACG‑CTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCACGTCTGGTTTGATAACCGTAACGATcccaa  >  1:434995/1‑273 (MQ=255)                                                                                                                                                                                                gCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATAACTCAGGAACAGGCGAATACG‑CTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGTTTGATAACCGTAACGCTCCCGa  >  1:428795/1‑275 (MQ=255)                                                                                                                                                                                                      ttAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAAcag                                                                                                                                                  >  2:68342/1‑126 (MQ=255)                                                                                                                                                                                                          aaCAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGa                                                                                                                                              <  1:68343/126‑1 (MQ=255)                                                                                                                                                                                                          aaCAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACG‑CTGGTGATCAACGCcg                                                                     >  1:349680/1‑198 (MQ=255)                                                                                                                                                                                                              aaaCCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACG‑CTGGTGATCAACGCcgacga                                                                 <  2:349676/198‑1 (MQ=255)                                                                                                                                                                                                                              tcaaaccagacgcgctgcagatCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGgcg                                                                                                                                                                <  2:232217‑M1/66‑1 (MQ=255)                                                                                                                                                                                                                                  accagacgcgctgcagatCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCgaa                                                                                                                                                            >  1:232220‑M1/19‑88 (MQ=255)                                                                                                                                                                                                                                          aaaaTCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCgaaaga                                                                                                                                                         >  1:188338/1‑83 (MQ=255)                                                                                                                                                                                                                                              tCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGaaaaa                                                                                                                                                     <  2:188336/83‑1 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                ACTGGCAATTACTCGCCATTCGTGCACTGGTGAAAGAAGGTAAAACCGGGCAGGCGGTTGAGTTGTTTAACCAACTACCGCAAGAACTGAACGATGCTCAGCGTCGCGAGAAAACACTGCTGGCGGTAGAGATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACG‑CTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGTTTGATAACCGTAACGATCCCGA  >  CP009273/3286949‑3287414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.