New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3735261 =	61 (1.780)	6 (0.190)	6/298	1.9	10.7%	coding (632/849 nt)	yiaJ	transcriptional repressor of yiaK‑S operon
	?	CP009273	3735587 =	44 (1.390)					coding (306/849 nt)	yiaJ	transcriptional repressor of yiaK‑S operon
Rejected: Frequency below/above cutoff threshold.

GATCCAACGAAGGAAATGTTAAAGTTTTGGCACTTGTCCAAAGCGTTATGTGATCGCGCCCAGGTCATCCCTGACAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATATGCTGGCCAATATAGGCACGGGTTCGCAGCATCCCGGTTGTGGGTTCCAGCTTATAAATCAAAATAGCGTGATCGTCTT  >  CP009273/3734999‑3735519                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                   gATCCAACGAAGGAAATGTTAAAGTTTTGGCACTTGTCCAAAGCGTTATGTGATCGCGCCCAGGTCATCCCTGACAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCGGTCTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTCATGTCGACAGCGAAATCGACACGCCGTACGGCACCCGCCAATGAATATCAAACACCGGAACAGCAATACAGAAGACGCCGAGTACGTTTTCTCCCAGCTCCATCGcccctcccc                                                                                                                                                                                                                                                        >  2:55717/1‑273 (MQ=255)      taCGGAGGAAATGTTCAAGTTTTGGCACTTGTCCCAAGCGTTATGTGATCGCGCCCAGGTCATCCCTGACAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCGGTTTCACGAAGTGGTTTCAGGAGATTTTTATCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCa                                                                                                                                                                                                                                                   <  2:179183/274‑1 (MQ=255)         gtaGGAAATGTTAAATTTTTGGCACGTGTCCAAAGCGTTATGTGAGCGCGCCCAGGTCATCTCTGACAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCTGTTTCACGCAGTGGTTTCAGGATATTTTTCTCTCCCACCCGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGTCACCCGCCCATGAATATCAAACGCCGGAACAGCAATACATGAGACTCCGAGTTCGTTTTCTTCTCTGTCCATTGCCGCTCCGCTTTCACGa                                                                                                                                                                                                                                                <  1:87030/273‑1 (MQ=255)                   atAAAGTTTTGTCACTTGTCCAAATCGGTATGTGATCGCGCCCATGCCATCCCTGAGACTCACTCCCAGTTCATTAGAAATCGCCTGCGCGGGTTCACGCAGTGGTTTCAGGAGATTTTTCGCTCCCACCGGGTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGACCAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCa                                                                                                                                                                                                                                      <  2:593886/274‑1 (MQ=255)                                           ggtttctttgATCGCGCCCAGGTCATCCCTGACAGTAACTCCCATTTCATTAGAAATGGCCGGCGCTGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGAAACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCt                                                                                                                                                                                                              <  2:117903/267‑1 (MQ=255)                                           gCGTTTTGTGATCGCTCCCAGTTCATCCCTTACAGTAAATCCCAGTTCATTAGAAATAGCCTTCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCt                                                                                                                                                                                                              <  1:59300/275‑1 (MQ=255)                                              ttATGTGATCGCGCCCAGGTCATCCCTGACAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCCATACAGGCGACGCCGCGTTCGTTTTCTTCCCTGTCCATCGCCGCCCCCCTCTCCCGAATGTCCGCCAGTTCGTCGAACACCCCGGGCAGCCCgg                                                                                                                                                                                                           >  1:68816/1‑275 (MQ=255)                                               tATGTGATCGCGCCCAGGTCATCCCTGACAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTATCACACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCCCgg                                                                                                                                                                                                           >  1:117904/1‑274 (MQ=255)                                                               ggTCATCCCTGACAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCCAACCCCGGAACAGCAATACAGGAGACGCCGAGTCCGTTTTCTTCTCTGTCCATCCCCGCTCCGCTTTAACGAATGTCCGCACGTTCGTCGAACATCGCAGGCAGCTCGGAAATGGAATTggcggt                                                                                                                                                                                           >  1:53768/1‑269 (MQ=255)                                                                   aTCCCTGACAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGccgctccgc                                                                                                                                                                                                                                                        <  1:318650/209‑1 (MQ=255)                                                                          gcAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTGTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTaa                                                                                                                                                                                        <  2:144369/265‑1 (MQ=255)                                                                          aCAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTaa                                                                                                                                                                                        >  1:144370/1‑266 (MQ=255)                                                                                aaTCCCAGTTCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTgc                                                                                                                                                                                                                                          >  1:405152/1‑210 (MQ=255)                                                                                    ccAGTTCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCa                                                                                                                                                                                                                                      <  2:405148/210‑1 (MQ=255)                                                                                        ttCATTAGAAATAGCCTGCGCGGTTTAACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATAGACACGGCGTACGGCACCCGCCCATGAATATAAAACACCGGAAAAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCAGTACATcgccgcn                                                                                                                                                                                                                                                            >  1:465316/1‑183 (MQ=255)                                                                                            ttAGAAATAGCCTGCTCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCGCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATAGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGccgctccgc                                                                                                                                                                                                                                                        <  2:465309/184‑1 (MQ=255)                                                                                                  gtAGCCTGCGCGGTTTCACGTAGTGGTTTCAGGAGATTGTTCTCTCCCCCCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTNCGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTa                                                                                                                                                       <  1:528096/274‑1 (MQ=255)                                                                                                  aTAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGATATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCTGCTCCGCTTTCANGAATGTGCNCCAGTTCGTCGAACATCGCGGGCAGCTCGGTACTGGTATTGCGGGTTAACGGCGGGACCTCATGCTGATAGCTTTCCCaca                                                                                                                                                        >  1:461490/1‑272 (MQ=255)                                                                                                  aTAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTCCACGAATGTGCGCCATTTCGTCGAACATCGCGGGCAGCGCGGTACGGGTCTCGCGGGTTACCGGCTGGACCTCACGCGGATGGttttgctatta                                                                                                                                                       >  2:573446/1‑268 (MQ=255)                                                                                                      ccTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTCCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTCCACGAACGTGCGCCAGTTCGTCGAACAACCCgg                                                                                                                                                                                                                    >  2:404595/1‑210 (MQ=255)                                                                                                       cTGCGGGTTTTCACGCAGTGTTTTCATGAGATTTTTCTCTCCCCCCTGTTTCAGACGTGATGTCAAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAANAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCATTTCTTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATg                                                                                                                                                     <  1:573455/272‑1 (MQ=255)                                                                                                          cgcgGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGCATGTGCGCCAGTTCTTCGCACATCGCCGGCACCCCCGTAATGGGATTTCGGGTTAACGGCTGGCTCCCATACNTATTCCTTTCCCATTATTGCTTc                                                                                                                                                >  2:410817/1‑274 (MQ=255)                                                                                                          cgcgGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCGGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGCACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTCCGCCAGTTCGTCGAACATCGCGGGCAg                                                                                                                                                                                                                <  1:404599/210‑1 (MQ=255)                                                                                                              gTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACg                                                                                                                                             <  1:410821/273‑1 (MQ=255)                                                                                                                             ttCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATATCATGCTGATGGCTTTCCCAGTATGAc                                                                                                                                                   <  1:393379/252‑1 (MQ=255)                                                                                                                               ctgcagaTTNTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACTCGGCGTACCGCACCCGCCCATGAATATCAACCACCGGAACAGCACTACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACg                                                                                                                          <  2:269352/271‑1 (MQ=255)                                                                                                                               catgataTTTTTCTCGCCCACATGTTTCTGACGTAATGGCGAAAGCGAAATCGACACGGCGTACGGCACCCGCGCATGAATATCCAACACCGGAACAGCAAGACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACg                                                                                                                          <  1:55718/269‑1 (MQ=255)                                                                                                                                 ggAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGCACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCg                                                                                                                                                                                              >  2:287521/1‑205 (MQ=255)                                                                                                                                    tccatcgcttattgcagggattacagtcctgcggctatgtgaccaccgcgcctgccgcagggagttatcgcctgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatataattcata                                                                                                                                                                                                                                                                    <  2:285739‑M1/1‑1 (MQ=255)                                                                                                                                     ccatcgcttattgcagggattacagtcctgcggctatgtgaccaccgcgcctgccgcagggagttatcgcctgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatat                                                                                                                                                                                                                                                                   >  2:126275‑M1/131‑132 (MQ=255)                                                                                                                                        tcgcttattgcagggattacagtcctgcggctatgtgaccaccgcgcctgccgcagggagttatcgcctgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatataattcatATcgc                                                                                                                                                                                                                                                                >  1:285743‑M1/128‑132 (MQ=255)                                                                                                                                               cccACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCt                                                                                                                                                                                                              >  1:220734/1‑175 (MQ=255)                                                                                                                                                   ccTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGt                                                                                                                                                                                                          <  2:220732/175‑1 (MQ=255)                                                                                                                                                                                       ctgccgcagggagttatcgcctgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATcg                                                                                                                                                                                                                                                                 >  2:505063‑M1/81‑84 (MQ=255)                                                                                                                                                                                           cgcagggagttatcgcctgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATcgccg                                                                                                                                                                                                                                                              <  2:45369‑M1/7‑1 (MQ=255)                                                                                                                                                                                               gggagttatcgcctgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATCGccgctcc                                                                                                                                                                                                                                                          >  1:45370‑M1/73‑83 (MQ=255)                                                                                                                                                                                                      gCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGaa                                                                                                <  2:75423/230‑1 (MQ=255)                                                                                                                                                                                                      gCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGaa                                                                                                >  1:75424/1‑230 (MQ=255)                                                                                                                                                                                                          cctgactaccaaatttattgccgtcgggaagaaggcgctgtctccgctgaatatcattcatATCGCCGCTCCGCTTTCACGAATGTgc                                                                                                                                                                                                                                          <  1:516349‑M1/27‑1 (MQ=255)                                                                                                                                                                                                            tgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTc                                                                                                                                        <  1:97790‑M1/125‑1 (MQ=255)                                                                                                                                                                                                              accaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATCGCCGCTCCGCTTTCACGAATGTGCGCCa                                                                                                                                                                                                                                      >  2:516341‑M1/58‑88 (MQ=255)                                                                                                                                                                                                                caccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCggg                                                                                                                                    >  2:97789‑M1/56‑184 (MQ=255)                                                                                                                                                                                                                atCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCa                                                                                                                                                                                                                                                   >  1:173031/1‑73 (MQ=255)                                                                                                                                                                                                                    aaCACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGaa                                                                                                                                                                                                                                               <  2:173029/73‑1 (MQ=255)                                                                                                                                                                                                                       cccgtcaccggtttACAGGAGGCGCCGAGCTCGTTTTCTTCTCCGTCCTTGTCTGCTCCTCTTTCACGAATGTGCGCCAGTTCGGCGAACATCGCGGGCAGCTCGGTAATGGGATTGCGGGTTAACGGCTGGAGCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCTAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATATGCTGGCCAATATAGGCACGGGTTCGCAGCATCCCGGTTGTGGGTTc                                  <  2:53767/262‑1 (MQ=255)                                                                                                                                                                                                                       acCGGATCAGCAATACAGGATACGCCGATTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTNGTCGAACANCGCGGGCAGCTCTGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATATGCGGGCCAATATAGGCACGGGTTCGCAGCATACCGGTTGTGGGTTc                                  <  1:445828/275‑1 (MQ=255)                                                                                                                                                                                                                            aaCAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGc                                                                                                                                                                                                               >  2:254246/1‑97 (MQ=255)                                                                                                                                                                                                                                gCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCgg                                                                                                                                                                                                           <  1:254250/97‑1 (MQ=255)                                                                                                                                                                                                                                   aTACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGc                                                                                                                                                                                                                  >  1:290047/1‑87 (MQ=255)                                                                                                                                                                                                                                     aCAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCNCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATATGCTGGCCAATATAGGCACGAGTTCACCGCATCTCGGTTGTGGGTTCCa                                <  1:475846/263‑1 (MQ=255)                                                                                                                                                                                                                                      cAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATATGCTGGCCAAtata                                                                   >  1:545547/1‑227 (MQ=255)                                                                                                                                                                                                                                       aGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCt                                                                                                                                                                                                              <  2:290043/87‑1 (MQ=255)                                                                                                                                                                                                                                         gagaCGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTa                                                                                                                                                                                                   >  1:196419/1‑96 (MQ=255)                                                                                                                                                                                                                                          agaCGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATATGCTGGCCAATATAGGCa                                                               <  2:545538/227‑1 (MQ=255)                                                                                                                                                                                                                                           gaCGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATcg                                                                                                                                                                                                                       >  1:418394/1‑74 (MQ=255)                                                                                                                                                                                                                                           gaCGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTa                                                                                                                                                                                         >  1:200009/1‑104 (MQ=255)                                                                                                                                                                                                                                            aCGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCAGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATATTGCCCATTGCGGAACAGTAGAGCGGAATATGCTGGCCAATATAGGCAAGGGTTCGCAGCATCCCGGTTGTGGGTTCCAGCTTATAAAACAAAATAGc             >  1:418680/1‑275 (MQ=255)                                                                                                                                                                                                                                             cGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGc                                                                                                                                                                                               <  2:196417/96‑1 (MQ=255)                                                                                                                                                                                                                                              gCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCggg                                                                                                                                                                                                                   >  2:311211/1‑75 (MQ=255)                                                                                                                                                                                                                                              gCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATgg                                                                                                                                                                                                     >  1:384779/1‑89 (MQ=255)                                                                                                                                                                                                                                              gCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAAc                                                                                                                                                                                       >  1:223583/1‑103 (MQ=255)                                                                                                                                                                                                                                              gCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATATGCt                                                                             >  2:184508/1‑209 (MQ=255)                                                                                                                                                                                                                                               ccGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCggg                                                                                                                                                                                                                   <  2:418390/74‑1 (MQ=255)                                                                                                                                                                                                                                               ccGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACgg                                                                                                                                                                                     <  2:200007/104‑1 (MQ=255)                                                                                                                                                                                                                                               ccGAGTTCGTTTTCTGCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTACAGCGGCATATGCTGGCCAATATAGGCa                                                               <  1:407734/222‑1 (MQ=255)                                                                                                                                                                                                                                                tgtcttcgctgaatatcattcatATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCAtt                                                                                                      <  1:580112‑M1/159‑1 (MQ=255)                                                                                                                                                                                                                                                  aGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGc                                                                                                                                                                                                               <  1:311215/75‑1 (MQ=255)                                                                                                                                                                                                                                                  aGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTAtt                                                                                                                                                                                                 <  2:384775/89‑1 (MQ=255)                                                                                                                                                                                                                                                  aGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCt                                                                                                                                                                                   <  2:223581/103‑1 (MQ=255)                                                                                                                                                                                                                                                   gTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAAc                                                                                                                                                                                       >  1:248700/1‑98 (MQ=255)                                                                                                                                                                                                                                                    ttcgctgaatatcattcatATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCgg                                                                                                  >  2:580103‑M1/20‑182 (MQ=255)                                                                                                                                                                                                                                                       gTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCt                                                                                                                                                                                   <  2:248696/98‑1 (MQ=255)                                                                                                                                                                                                                                                        ttttCTTCTCTGTCCATCGCCGCTCGTCTTTCACGAATGTGCGCCAGTTTGTCGAACATCGCGGTCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTTATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATATGCTGGCCAATATAGGCACGGGTTCGCAGCATCCCGGTTGTGGGTTCCAGCTTATAAATCAAAATAGCGTGATCGTCtt  <  1:432711/274‑1 (MQ=255)                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                   GATCCAACGAAGGAAATGTTAAAGTTTTGGCACTTGTCCAAAGCGTTATGTGATCGCGCCCAGGTCATCCCTGACAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATATGCTGGCCAATATAGGCACGGGTTCGCAGCATCCCGGTTGTGGGTTCCAGCTTATAAATCAAAATAGCGTGATCGTCTT  >  CP009273/3734999‑3735519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.