| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 481,171 | Δ1 bp | 100% | intergenic (‑96/‑46) | acrA ← / → acrR | multidrug efflux system/transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 481,171 | 0 | C | . | 100.0% | 157.0 / NA | 35 | intergenic (‑96/‑46) | acrA/acrR | multidrug efflux system/transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (17/18); total (17/18) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CGCCAACGGCGGGCATCTGCTGGCCACCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATACATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAAC > CP009273/480952‑481433 | cGCCAACGGCGGGCATCTGCTGGCCACCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCAAAAATTTATGTAAATCTAACGACTGTAAATTCACGAACATATGgaaagaaa > 1:502561/1‑275 (MQ=255) ccTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTTCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCACATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTACTATGGTACATA‑NTTCACAAANGTATGTAAATCTAACGCCTGTAAATTCACGAACATCTGGCACGAAAAAACAAAAAATAAGCACCACAAACGCACAAAcaca > 1:555664/1‑274 (MQ=255) tttGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTAACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCACCAACACATCCTc > 1:197932/1‑275 (MQ=255) ccacagagCATCAGAACGACCGCCAGATGCGTAAACCCTCTGTTTTTGTTCATATGTACACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTAACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCCcagcag < 2:197929/270‑1 (MQ=255) tctGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGCAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGAAACaga > 1:475655/1‑273 (MQ=255) tGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAatg > 2:716558/1‑113 (MQ=255) cATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAatgtatg < 1:716564/113‑1 (MQ=255) tatGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGACGAGATTTCAAAAGCAACTGGCGTTa > 1:107179/1‑271 (MQ=255) actcaaaccctgaaGTGTCCGATTTCAAAATGGTCAATGGTCAAAAGTTAATAAACCCATTGTTGCGTTTATATTATAGTCGTGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTAcgcg < 2:107179/262‑1 (MQ=255) tAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAAtt < 2:742875/128‑1 (MQ=255) aaCCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTcac > 1:456622/1‑96 (MQ=255) ttgAGTGTCCGATTTCAAATTGTTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGNGCTATGGTNCATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGACATTGCAAAAGCAGCTGGCGTTAcgcg < 1:559489/263‑1 (MQ=255) tCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTca < 1:74626/91‑1 (MQ=255) tCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAat < 2:456619/96‑1 (MQ=255) cGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAatgt > 1:751260/1‑97 (MQ=255) gtgtCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAatg > 1:809123/1‑93 (MQ=255) tgtCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAatgtatgt < 2:751254/97‑1 (MQ=255) tCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAatgt > 2:365168/1‑91 (MQ=255) ccGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAatgtatg < 2:809116/93‑1 (MQ=255) aTTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAatgtatgt < 1:365171/91‑1 (MQ=255) cAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTAACATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGGGTTACGCGCGGTGCACTCTACTGGCATTTaaaa > 2:257966/1‑275 (MQ=255) gtactagtttaaaaGTTAATAAAANAATTTCTGCTTTTATATTATCGTTGTGCTATGTTATATA‑ATTTACAAATGTATGTAAATCTAACGACTTTAAATTCACGACCCTATTGCACGAAATACGAAACAAGAAGCGCACGAAACGCGCCAACACATCCTCAATGTGGCTCTACGTCTTCTCTCACAGTAGGGGGTATCGTCCACCTCGCTTGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGt < 2:502558/265‑1 (MQ=255) tcaaAATTTTATTAACCCTTTGTGGCGTTTATATTATCTTCGTGCTATGATACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATTGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTg < 1:363990/275‑1 (MQ=255) ttAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGcc > 2:206698/1‑134 (MQ=255) taaACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAaca < 1:206701/134‑1 (MQ=255) atatTATCGTCGTGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCtttt > 1:391988/1‑142 (MQ=255) tatCGTCGTGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTca < 2:391985/142‑1 (MQ=255) atCGGCGTGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGACTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAATCGCAAGAAACGCGCCAACACAACCTCGGTGTTGCTCTCCGCCTTTTCTCACAGCAggg > 2:124338/1‑149 (MQ=255) tcgtcgTGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTAcg > 1:43501/1‑197 (MQ=255) cgtcgtGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACCCCTCCTAGATGTGGCTCTACGTCTTTTCTCAcag > 2:404868/1‑142 (MQ=255) tcgtACTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTa < 1:124339/149‑1 (MQ=255) cgtGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTAcgcgcg < 2:43501/197‑1 (MQ=255) gtGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAgg < 1:404871/142‑1 (MQ=255) gtGCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTGTCATCCACCTCNCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTAGGATTTGTTCAGTGAGATATGGGAACTGTCAGAATCCAATATTggaaa > 1:749894/1‑272 (MQ=255) gCTATGGTACATA‑ATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAAc < 1:257969/275‑1 (MQ=255) | CGCCAACGGCGGGCATCTGCTGGCCACCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATACATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAAC > CP009273/480952‑481433 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |