| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 25 (0.650) | 67 (1.730) | 45/276 | NT | 69.1% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | 35 (0.900) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
Only 100 of 106 total aligned reads displayed.
AGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCA > CP009273/359865‑360360 | ccatccagtgcagtggctccgatgataatctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGc‑c > 1:490000‑M1/240‑275 (MQ=255) tccagtgcaggagctccgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtcactcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGTCGGGCGTACTGCCCTC‑Ca < 1:764113‑M1/37‑1 (MQ=255) caggagctccgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACcctcccgg < 1:66491‑M1/46‑4 (MQ=255) ggctccgattatatgctgtcaaacatgataattcctctccccaatccctggcagtttatggcgggcttgctgcccgcctacctccgggccgttgcttcgcaacgttcaaatccgctcccggcagatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGt > 1:785954‑M1/226‑275 (MQ=255) caggCTTCTTACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTCCCCGC‑CACCCTCCGGGCCg < 1:669087/272‑1 (MQ=255) ccgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgcccccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagatataacgcaaggcccagtctttngactgaacctttcgttttattttatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGACCCGCCCGCACACCC‑ccgggcccgtgc < 1:641286‑M1/53‑6 (MQ=255) tGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCCCTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGACAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCTGCCCGC‑CACCCCCCGGGCCGTTgtctcccgcccc > 2:669081/1‑263 (MQ=255) ttGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcgg < 1:356233/275‑1 (MQ=255) cgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacanacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAt > 1:693067‑M1/192‑275 (MQ=255) acgggtcattggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtnctactcaggagagcgttctccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGCTTTGTc > 1:612965‑M1/187‑275 (MQ=255) gtgAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTCCCTCGCAACGTTCAAAACCGCTCCCGGCGGACTTGttccacc > 1:73791/1‑268 (MQ=255) tatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTg > 1:806878‑M1/170‑177 (MQ=255) cccGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCGGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTTTCCTACTCAGGAGAGCGCTCAc > 1:102927/1‑275 (MQ=255) cagtgcccgctcCGGCTGCCGTAGTCCGGCCCGTTCACTCACCTGTTTCCCGTGTGCAGCGACAGCTAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGACACCATCCAGTGCAGGAGCTCCGATGATTAGCTGTCAAACATGAGAATTCCGATCCGCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCAc < 2:745632/266‑1 (MQ=25) ggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggccaagtctttcgactgagcctttcgttttcttgaatgcctggggnattAATTCCTGGCAGTTTATGGCGGGCGTcc < 1:751665‑M1/28‑1 (MQ=255) gTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCGCTTCCTGGCAGNTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCCGATTTGTCCTACTCAGGAGAGCGATCACCGACAcacaacccgtcaccc > 1:745638/1‑266 (MQ=255) ttCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGTGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCCGCCGATTTGCCCTCCTCAGGCCGCCGGTCACCGCCCACCAACAACTAAAACaaa > 2:702284/1‑274 (MQ=37) cAGTTCAATCAACTTTTTACCTTGGGGCGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc < 1:523271/274‑1 (MQ=255) ttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTc < 2:520443‑M1/27‑1 (MQ=255) ttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTTCTTCCCGC‑CACCCTCCTGTCCGTTGCTGCTCAACGTTCAAATCTGCTCCCGGCCGCTTTGGCCTCCTCAGCAGAGCGTTCACCTCCCAGCaacaggtaaaactcaacgaccaa < 2:767471‑M1/140‑12 (MQ=255) ttCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGAGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAAAAACAGAAAAAAACAAAAGCACAgac > 1:450583/1‑273 (MQ=255) ttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGc > 1:520446‑M1/131‑161 (MQ=255) gtcaaCTGTTTACCTTGTGGAGCCACATCCAGAGGCACTTCCCCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATAAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCg < 2:348263/185‑1 (MQ=255) cgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGccc < 1:267595‑M1/33‑1 (MQ=255) tGTTTACCTTGTGGAGCGACATCGAGAGACCCTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAANCTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGCGAGCGTTCACCGCCAAACCACCACTAAAACGAAAAGCCCAGACTTTcacacgc > 1:596027/1‑269 (MQ=25) tgGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGttt < 1:141945/275‑1 (MQ=255) ggAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGccc > 1:159340/1‑144 (MQ=255) ctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGcc < 1:734625‑M1/32‑1 (MQ=255) cggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcacagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGc‑c > 2:734619‑M1/108‑143 (MQ=255) atttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTTCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCACTCCCCGCGGATTTGTCctcctc < 1:334655‑M1/95‑1 (MQ=255) tcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGcc < 1:515663‑M1/32‑1 (MQ=255) gCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCNTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgg < 1:702290/272‑1 (MQ=255) actcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGc‑c > 2:515660‑M1/93‑128 (MQ=255) ttCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGcc > 1:168571/1‑123 (MQ=255) ccGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGc‑c < 2:168570/123‑1 (MQ=255) ccGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCa < 1:368928/146‑1 (MQ=255) gagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCtt < 1:432591‑M1/55‑1 (MQ=255) gagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCGTCGCAACGTTCANATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaa < 1:695175‑M1/127‑1 (MQ=255) agcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTc < 1:25857‑M1/27‑1 (MQ=255) gcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCa > 2:432588‑M1/83‑141 (MQ=255) gcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAGCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGa > 2:695169‑M1/83‑213 (MQ=255) cgttcaccgacaaacaacagataaaactaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTc < 1:496931‑M1/95‑1 (MQ=255) cgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGt < 1:413364‑M1/13‑1 (MQ=255) cgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGc < 1:43436‑M1/47‑1 (MQ=255) tcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGagag < 1:40832‑M1/102‑1 (MQ=255) caccgacaaacaacagataaaacgaagggccaagtctttcggctgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGga > 2:496928‑M1/78‑176 (MQ=255) caccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTAt > 2:413361‑M1/78‑94 (MQ=255) caccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGtt > 2:43436‑M1/78‑128 (MQ=255) cgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGtt > 2:40832‑M1/75‑180 (MQ=255) aCCATCCAGCGCCACCATCCAGTCCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTc > 1:192454/1‑97 (MQ=255) acaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTAt < 2:473782‑M1/17‑1 (MQ=255) acaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:421161‑M1/85‑1 (MQ=255) tCCAGCGCCACCATCCAGTGCAGGAGCACCGATGATAAGCTGTCAAACAGGAGAATTCCGATCCCCAATGCCTGGCAGTTTATGGCGGGCGTCCTGc < 2:192451/97‑1 (MQ=39) cagataaaacgagaggcccagtcttgcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGc > 1:322845‑M1/65‑275 (MQ=255) cagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcg > 1:473785‑M1/65‑85 (MQ=255) cagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc > 2:421158‑M1/65‑153 (MQ=255) ataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTc < 1:67846‑M1/5‑1 (MQ=255) aacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTgg > 2:67846‑M1/58‑66 (MQ=255) ccaTCCAGTGCAGTGGCTCCGATGATAATCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgcc > 1:490000‑M2/1‑239 (MQ=255) ccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTc > 1:718641/1‑61 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCACTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatgtcgggcgtactgccctcca < 1:764113‑M2/273‑38 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg < 2:718635/61‑1 (MQ=255) ccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGga > 1:419188‑M1/48‑146 (MQ=255) cAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctcccgg < 1:66491‑M2/275‑47 (MQ=255) tctttcgactgggcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CTCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGTGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTta > 1:767477‑M1/44‑275 (MQ=255) gctgtcggctgagcctttcgttttatttgaggcctggggaattAATTCCTGGCAGTTTAGGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTta > 1:25330‑M1/44‑275 (MQ=255) ggcTCCGATTATATGCTGTCAAACATGATAATTCCTCTCCCCAATCCCTGGCAGTTTATGGCGGGCTTGCTGCCCGC‑CTACCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCAGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgt > 1:785954‑M2/2‑225 (MQ=255) ccGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATATAACGCAAGGCCCAGTCTTTNGACTGAACCTTTCGTTTTATTTTATGCCTGGGGAATTaattcctggcagtttatggcgggcgacccgcccgcacacccccgggcccgtgc < 1:641286‑M2/274‑54 (MQ=255) gagcctttcgttttatttgatgcctggggaattAATTc < 2:125038‑M1/5‑1 (MQ=255) gagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTcc < 2:35640‑M1/28‑1 (MQ=255) gagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcg < 1:561341‑M1/78‑1 (MQ=255) gagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 2:305206‑M1/85‑1 (MQ=255) gagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:454322‑M1/85‑1 (MQ=255) gagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTACGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGt < 1:319921‑M1/141‑1 (MQ=255) gagcctttcgttttatttgatgcccgggtaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCggg < 1:567527‑M1/46‑1 (MQ=255) gagcctttcgctttatttgatgcctggggaattAATTc < 1:802537‑M1/5‑1 (MQ=255) agcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:600843‑M1/85‑1 (MQ=255) ctttcgttttatttgatgcctggggaattAATTCCTgg > 2:802530‑M1/30‑38 (MQ=255) ctttcgttttatttgatgcctggggaattAATTCCTgg > 1:125039‑M1/30‑38 (MQ=255) ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGcc > 1:35640‑M1/30‑61 (MQ=255) ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGt > 2:567524‑M1/30‑79 (MQ=255) ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggcgg > 2:561338‑M1/30‑111 (MQ=255) ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc > 1:305209‑M1/30‑118 (MQ=255) ctttcgttttatttgatgcctcgtgaattATTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCttt > 2:319918‑M1/30‑174 (MQ=255) ctttcgttttatttgaggcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc > 2:454319‑M1/30‑118 (MQ=255) tttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc > 2:600837‑M1/29‑117 (MQ=255) tttatttgatgcctggggaattAATTCCTGGCAGTTTATg < 1:760847‑M1/18‑1 (MQ=255) tttgatgcctggggaattAATTCCTGGCAGTTTATggcgg > 2:760841‑M1/19‑40 (MQ=255) tGAGATTTCCGTTCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgct > 1:330133‑M2/1‑200 (MQ=255) atgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTc < 1:138945‑M1/159‑1 (MQ=255) tgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAg < 1:648611‑M1/134‑1 (MQ=255) gcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCgg < 1:313539‑M1/45‑1 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCAcc > 2:165544/1‑120 (MQ=255) ctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCGGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGttt > 2:138944‑M1/11‑173 (MQ=255) tggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc > 1:18235‑M1/10‑98 (MQ=255) tggggaattAATTCCTGGCAGTGTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc > 2:648605‑M1/10‑147 (MQ=255) ggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCg > 2:313536‑M1/9‑57 (MQ=255) gggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCgg < 1:261354‑M1/45‑1 (MQ=255) aTCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGaca < 1:165545/120‑1 (MQ=40) attAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCg > 2:261351‑M1/4‑52 (MQ=255) | AGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGC‑CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCA > CP009273/359865‑360360 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |