| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP009273 | 2,332,650 | (CCG)2→1 | 90.1% | coding (248‑250/2628 nt) | gyrA ← | DNA gyrase (type II topoisomerase), subunit A |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2332649 | 1 (0.030) | 9 (0.240) | 9/270 | NT | 90.1% | coding (251/2628 nt) | gyrA | DNA gyrase (type II topoisomerase), subunit A |
| ? | CP009273 | 2332653 = | 1 (0.030) | coding (247/2628 nt) | gyrA | DNA gyrase (type II topoisomerase), subunit A | |||||
GATACCGGAAGAACCGTTCACCAGCAGGTTAGGAATTTTGGTTGGCATGACGTCCGGAATTTTTTCCGTGCCGTCATAGTTATCAACGAAATCGACCGTCTCTTTTTCGAGATCGGCCATCAGTTCATGGGCAATTTTCGCCAGACGGATTTCCGTATAACGCATTGCCGCCGCAGAGTCGCCGTCGATAGAACCGAAGTTACCCTGACCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGTCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACGGCCAACAATGACCGACATCGCATAATCCAGATAGGAGCTCTTCAGCTCTTCCTCAATGTTGACCGGTGTAATTTCTCTCGCAAGGTCGCTCATCTAACCGCTATC > CP009273/2332378‑2332911 | gATACCGGAAGAACCGTTCACCAGCAGGTTAGGAAGTTTGGTTGGCATGACGTCCGGAATTTTTTCCGTGCCGTCATAGTTATCAACGAAATCGACCGTCTCTTTTTCGAGATCGGCCATCAGTTCATGGGCAATTTTCGCCAGACGGATTTCCGTATAACGCATTGCCGCCGCAGAGTCGCCGTCGATAGAACCGAAGTTACCCTGACCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGagt < 1:789210‑M1/275‑4 (MQ=255) agaatcaaatgaaTCGACTGTCTTTTTTGCGCTGGCGCACAGCAGTTCCTGGGACATTTTCGCTAGACGGATTTCCGTATAACGGTGTGCCGCCGCAGAGTCGTCGGCAATAGAACCGGAGTGACCCTGACCGTCTACCAGCATATGACGCAGCGAGAACGGCTGTGCCATGCGGACGATCGTGTCATAGA‑‑‑CCGAGTCACCATGGGGCTGGTCTTTGCCGCTTACGTCACCACCGACACGGGCAGCTTTTTTCTAGGCTTTGCTCCAGTCATTGc < 2:16518/264‑1 (MQ=255) cGCATTGCCGCCGCAGAGTCGCCGTCGATAGAACCGAAGTTACCCTGACCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGagtcaccatggggatggtatttaccgagtacgtcaccaacgacacgggcagattgtttataggctttg > 2:550387‑M1/1‑112 (MQ=255) ttGCCGCCGCAGAGTCGCCGTCGATAGAACCGAAGTTACCCTGACCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGagtcaccatggggatggtatttaccgattacgtcacccacgacaccggcagattttttataggctttgttcc < 1:550390‑M1/180‑73 (MQ=255) tCGCCGTCGATAGAACCGAAGTTACCCTGACCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGagtcaccatggggatggtatttaccgattacgtcaccaacgacacgggcagattttttataggctttgttccagtcattgcctagtacgttcatggcgtaaagtacgcgacggtgtaccggcttcaggccatctcggacatctggcagcgcacggccaacaatgaccgacatcgcataatc > 1:291871‑M1/1‑94 (MQ=255) aCCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGagtcaccatggggatggtatttaccgattacgtcaccaacgacacgggcagattttttataggctttgttccagtcattgcctagtacgttcatggcgtaaagtacgcgacggtgtaccggcttcaggccatctcggacatctggcagcgcacggccaacaatgaccgacatcgcaaaatccagataggagctcttcagctcttcctcaa > 1:496908‑M1/1‑65 (MQ=255) tCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCTagtcaccatggagatggtatttaccgattacgtcaccaacgacacgggcagattttttataggctttgttccagtcattgcctagtacgttcatggcgtaaagtgcgcgacggtgtaccggcttcaggccatctcggacatctggcagcgca < 1:773953‑M1/213‑153 (MQ=255) cATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGagtcaccatggggatggtatttaccgattacgtcaccaacgacacgggcagattttttataggctttgttccagtcattgcctagtacgttcatggcgtaaagtacgcgagggtgtaccggcttcaggccntctcggacatctggcagcgcccggccaacaatgaccgacatcgcataatccagataggagcccttcagctcttcctcaatgttgaccggt > 1:658303‑M1/1‑53 (MQ=255) cGTGTCATAGACCGagtcaccatggggatggtatttaccgattacgtcaccaacgacacgggcagatttt > 1:364072‑M1/1‑14 (MQ=255) tgtCATAGACCGagtcaccatggggatggtatttaccgattacgtcaccaacgacacgggcagattttttataggctttgttccagtcatngcctagtacgttcatggcgtaaagtacgcgacggtgtaccggcttcaggccatctcggacatctggcagcgcacggccaacaatgaccgacatcgcataatccagataggagctcttcagctcttcctcaatgttgaccggtgtaatttctctcgcaaggtcgctcatctaaccgctatccct < 1:638470‑M1/274‑263 (MQ=255) tCATAGACCGagtcaccatggggatggtatttaccgattacgtcaccaacgacacgggcagattttttat < 2:364069‑M1/70‑61 (MQ=255) aCCGagtcaccatggggatggtatttaccgattacgtcaccaacgacacgggcagattttttataggctttgttccagtcatt > 1:560270‑M1/1‑4 (MQ=255) gagtcaccatggggatggtatttaccgattacgtcaccaacgacacgggcagattttttataggctttgttccagtcattgcctagtacgttcatggcgtaaagtacg < 1:378643‑M1/108‑108 (MQ=255) | GATACCGGAAGAACCGTTCACCAGCAGGTTAGGAATTTTGGTTGGCATGACGTCCGGAATTTTTTCCGTGCCGTCATAGTTATCAACGAAATCGACCGTCTCTTTTTCGAGATCGGCCATCAGTTCATGGGCAATTTTCGCCAGACGGATTTCCGTATAACGCATTGCCGCCGCAGAGTCGCCGTCGATAGAACCGAAGTTACCCTGACCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGTCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACGGCCAACAATGACCGACATCGCATAATCCAGATAGGAGCTCTTCAGCTCTTCCTCAATGTTGACCGGTGTAATTTCTCTCGCAAGGTCGCTCATCTAACCGCTATC > CP009273/2332378‑2332911 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |