Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009273	579508	579520	13	3 [2]	[2] 3	appY	global transcriptional activator; DLP12 prophage

TAAATTCATTTATACTAACAAATATAAATACATTTACCTGTAAAATTACTGGAATAATCAGTTTTAATATTGAG  >  CP009273/579513‑579586         |                                                                  tAAATTCATTTATACTAACAAATATAAATACATTTACCTGTAAAATTACTGGAATAATCAGTTTTAatat      >  2:171672/1‑70 (MQ=255)     ttCATTTATACTAACAAATATAAATACATTTACCTGTAAAATTACTGGAATAATCAGTTTTAATATTGAg  <  1:171678/70‑1 (MQ=255)         tttATACTAACAAATATAAATACATTTACCTGTAAAATTACTGGaat                     >  2:351574/1‑47 (MQ=255)         |                                                                  TAAATTCATTTATACTAACAAATATAAATACATTTACCTGTAAAATTACTGGAATAATCAGTTTTAATATTGAG  >  CP009273/579513‑579586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑