New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 119789	33 (1.910)	4 (0.240)	4/298	NT	12.1%	coding (286/2664 nt)	aceE	pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding
	?	CP009273	= 119884	26 (1.530)					coding (381/2664 nt)	aceE	pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding

TTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTATCAGCAACTACATCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAACCATTTATGATGTGTGCTTTAACCACTTCTTCCGTGCACGCAACGAGCAGGATGGCGGCGACCTGGTTTACTTCCAGGGCCACATCTCCCCGGGCGTGTACGCTCGTGCTTTCCTGGAAGGTCGTCTGACTCAGGAGCAGCTGGATAACTTCCGTCAGGAAGTTCACGGCAATGGC  >  CP009273/119515‑120025                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                             tttCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTGGCCGCAGGCACAGGTATCAGCAACTACATCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACAGGAACGCCGAATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGC                                                                                                                                                                                                                                              >  1:92895‑M1/1‑275 (MQ=255)                                                              aagatgaaatgagGTGTTGAGGGTNACCAGTATCTGATCCACCAAATGCTTGCTGAAGACCGCAAAGGCGGTGTAAACGGAGCCGCAGGCAAAGGTATCAGCAACTACATCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCCGGAACTGGAACGCCGTATTCGTTCAGGTATCCGCGGGAACGCCGTCAGACCGGGGCTGCGTGCGTCGAAAACAGACCTCGAACGGGGCGGCCATATGGCGTCCTTCCGGACTTCGGCa                                                                                                                                                                                   <  2:217653/262‑1 (MQ=255)                                                               ttcgtaagtatggTGTTGAGCGTGCTCTGTATCTGATCTACCATCTGCTTGCTGCAGCCCGCAAAGTCGGTTTTAAAGTAGCCGCAGGCACCGCTATTCGCCACTACATCAACTCTATCCCCGTCGGAGAAAACCCGGAGTATTCGTAGAAACTGGAACTGGAATGCGGTATTCTTGCATCTATCCGCTAGAACGCCAGCATGACGGTGCTGCGTGCGTCTAAAAAAGACCTCGAACCGGGCGGCCATATGGCGTCCTTCCAGTCTGCCGCAAc                                                                                                                                                                                 <  2:92893/263‑1 (MQ=255)                                                                                     ttcTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCAAAGGTATCAGCAACTACATCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAACCATTTATGATGTGTGCTTTAAc                                                                                                                                                           <  1:112709/272‑1 (MQ=255)                                                                                      gCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTATCAGCAACTACATCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGACGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAACCATTTATGATGTGTGCTTTAACCa                                                                                                                                                         >  1:317053/1‑275 (MQ=255)                                                                                      gCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTATCAGCAACTACATCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGATCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCt                                                                                                                                                                                         >  1:322092/1‑243 (MQ=255)                                                                                          aGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTATCAGCAACTACATCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCg                                                                                                                                                                                     <  2:322080/243‑1 (MQ=255)                                                                                                      aCCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTATCAGCAACTACATCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAAc                                                                                                                                                                                                                      >  1:133925/1‑198 (MQ=255)                                                                                                       ccAACTGGTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTATCAGCAACTACATCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGNACTGGAACGCTTTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTGCCAGTCTTCCGCAACCATTTATGATGTGTGCTTTAACCACTTCTTCCGTGCACGCa                                                                                                                                        <  1:302275/275‑1 (MQ=255)                                                                                                          aCTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTATCAGCAACTACATCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTggg                                                                                                                                                                                                                  <  2:133923/198‑1 (MQ=255)                                                                                                                         ccGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTATCAGCAACTACATCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTTCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTc                                                                                                                                                                                       >  1:268969/1‑210 (MQ=255)                                                                                                                                     tgtAAACGTAGCCGCTGGCACAGCAATCAACAACTACATCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCNTCCTTCCAGTCTTc                                                                                                                                                                                       >  1:232011/1‑198 (MQ=255)                                                                                                                                         aaCGGAGCCGCAGGCACAGGTATCAGCAACTACATCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCa                                                                                                                                                                                   <  2:232004/198‑1 (MQ=255)                                                                                                                                                                      cTACATCAACACCATCCCCGTTGAAGAGCAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGCTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGCCGGCAATATGTCGTCCTTCCAGTCTTCCGAAACCATTTATGATGTGTGCTTTACCAACTTCTTCCGTGCACCCAACGACCAGGCTGTCGTCCACATGTTTAACTTCCAGGCCCACACCTCCCGGTTCGTGTCCGc                                                                           >  2:299097/1‑273 (MQ=255)                                                                                                                                                                      cTACATCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAAc                                                                                                                                                                                                                      >  2:211639/1‑134 (MQ=255)                                                                                                                                                                          aTCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTggg                                                                                                                                                                                                                  <  1:211645/134‑1 (MQ=255)                                                                                                                                                                          aTCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAACCATTTATGATGTGTGCTTTAACCACTTCTTCCGTGCACGCAACGAGCCGGATGGCCGCGACCTGGTTTACTTCCAGGGCCCCATCTCCCCGGGCATGTACGCTcct                                                                       >  2:284886/1‑271 (MQ=255)                                                                                                                                                                               cacCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCacggaagaagtggttaaagcacacatcataaatggttgcggaagactggaaggacgccatatggccgcccagttcgag                                                                                                                                                                >  1:267711‑M1/1‑101 (MQ=255)                                                                                                                                                                                acCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCG‑AAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAACCATTTATGATGTGTGCTTTAACCACTTCTTCCGTGCACg                                                                                                                                          >  2:196198/1‑199 (MQ=255)                                                                                                                                                                                   aTCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCacggaagaagtggttaaagcacacatcataaatggttgcggaagactggaaggacgccatatggccgcccagttcgaggtct                                                                                                                                                            <  2:267701‑M1/179‑83 (MQ=255)                                                                                                                                                                                    tCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGACTTc                                                                                                                                                                                       >  1:299281/1‑151 (MQ=255)                                                                                                                                                                                    tCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCG‑AAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAACCATTTATGATGTGTGCTTTAACCACTTCTTCCGTGCACGCAAc                                                                                                                                      <  1:196202/199‑1 (MQ=255)                                                                                                                                                                                        cGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCa                                                                                                                                                                                   <  2:299270/151‑1 (MQ=255)                                                                                                                                                                                           tGAAAAACAACCGGAGTGTCCGGGTAAGCTGGAACTGGAACGCCGTATTCGTGCAGCTATCCGCTGGAACACCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAACCATTTATGATGTGTGCTTTAACCACTTCTTCCGTGCACGCAACGAGCAGGATGGCGGCGACCTGGTTTACTTCCAGGGCCACATCTCCCCGGGCGTGTACGCTCGTGCTTTCCTGGAAGgtcgtc                                                    <  2:317042/275‑1 (MQ=255)                                                                                                                                                                                            gaagaaCAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCacggaagaagtggttaaagcacacatcataaatggttgcggaagactggaaggacgccatatggccgcccagttcgaggt                                                                                                                                                              >  2:74028‑M1/1‑88 (MQ=255)                                                                                                                                                                                            gaagaaCAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAACCATTTATGATGTGTGCTTTAACCACTTCTTCCGTGCACGCAACGAGCAGGATggcggc                                                                                                                       >  1:55320/1‑207 (MQ=255)                                                                                                                                                                                                aacaacCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCacggaagaagtggttaaagcacacatcataaatggttgcggaagactggaaggacgccatatggccgcccagttcgaggtcttt                                                                                                                                                          <  1:74030‑M1/168‑85 (MQ=255)                                                                                                                                                                                                                   tAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTc                                                                                                                                                                                       >  1:318862/1‑120 (MQ=255)                                                                                                                                                                                                                       ctggaactggaaCGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCa                                                                                                                                                                                   <  2:318851/120‑1 (MQ=255)                                                                                                                                                                                                                                             gTTCGGCTATCCGCTGGAACGCCATAATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACGGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAACCATTTATGATGTGTGCTTTAACGACTTCTTCCGTGCACGCAACGAGCAGGATGGCGGCGACCTGGTTTACTTCCAGGGCCACATCTCCCCGGGCGTGTACGCTCGTGCTTTCCTGGAAGGTCGTCTGACTCAGGAGCAGCTGGATAACTTCCGTCAGGAAGTTCACGGCAATGGc  <  1:299108/275‑1 (MQ=255)                                                                                                                                                                                                                                               tCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCg                                                                                                                                                                                     >  1:171307/1‑94 (MQ=255)                                                                                                                                                                                                                                                cAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAACCATTTATGATGTGTGc                                                                                                                                                                 >  2:179595/1‑113 (MQ=255)                                                                                                                                                                                                                                                   cTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAAc                                                                                                                                                                                 <  2:171303/94‑1 (MQ=255)                                                                                                                                                                                                                                                    tATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAACCATTTATGATGTGTGCTTTa                                                                                                                                                             <  1:179599/113‑1 (MQ=255)                                                                                                                                                                                                                                                             gAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAACCATTTATGATGTGTGCTTTAACCACTTCTTCCGTGCACGCAAc                                                                                                                                      >  2:1832/1‑127 (MQ=255)                                                                                                                                                                                                                                                                cGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAACCATTTATGATGTGTGCTTTAACCACTTCTTCCGTGCACGCAACGAGCAGGATGGCGGCGACCTGGTTTACTTCCAGGGCCACATCTCCCCGGGCGTGTACGCTCGTGCTTTCCTAGAAGGTCGTCTGACTCAg                                            >  1:326636/1‑214 (MQ=255)                                                                                                                                                                                                                                                                 gCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAACCATTTATGATGTGTGCTTTAACCACTTCTTCCGTGCACGCAACGAGc                                                                                                                                  <  1:1832/127‑1 (MQ=255)                                                                                                                                                                                                                                                                    atcatGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAACCATTTATGATGTGTGCTTTAACCACTTCTTCCGTGCACGCAACGAGCAGGATGGCGGCGACCTGGTTTACTTCCAGGGCCACATCTCCCCGGGCGTGTACGCTCGTGCTTTCCTGGAAGGTCGTCTGACTCAGGagc                                        <  2:326624/214‑1 (MQ=255)                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                             TTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTATCAGCAACTACATCAACACCATCCCCGTTGAAGAACAACCGGAGTATCCGGGTAATCTGGAACTGGAACGCCGTATTCGTTCAGCTATCCGCTGGAACGCCATCATGACGGTGCTGCGTGCGTCGAAAAAAGACCTCGAACTGGGCGGCCATATGGCGTCCTTCCAGTCTTCCGCAACCATTTATGATGTGTGCTTTAACCACTTCTTCCGTGCACGCAACGAGCAGGATGGCGGCGACCTGGTTTACTTCCAGGGCCACATCTCCCCGGGCGTGTACGCTCGTGCTTTCCTGGAAGGTCGTCTGACTCAGGAGCAGCTGGATAACTTCCGTCAGGAAGTTCACGGCAATGGC  >  CP009273/119515‑120025

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.