New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 354947	11 (0.640)	5 (0.320)	4/274	NT	34.6%	coding (438/660 nt)	cynT	carbonic anhydrase
	?	CP009273	= 355075	9 (0.580)					coding (566/660 nt)	cynT	carbonic anhydrase

TCTGTTCGTTATTCGCAACGCGGGCAATATCGTCCCTTCCTACGGGCCGGAACCCGGTGGCGTTTCTGCTTCGGTGGAGTATGCCGTCGCTGCGCTTCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGT  >  CP009273/354677‑355209                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                       tCTGTTCGTTATTCGCACCGCGGGCAATATCGTCCCTTCCTACGGGCCGGAACCCGGTGGCGTTTCTGCTTCGGTGGAGTATGCCGTCGCTGCGCTTCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGa                                                                                                                                                                                                                                                                    <  1:84111/275‑1 (MQ=255)                                                                    gCTTCGGTGGAGTATGTCGTCGCTGCGCATCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTC‑GTTAATTAGGCGCGCCCGCATTCCNATTTACCGTCAAAAGCTGCGGCGGTGGTACGTGAAAACGTCATTGCTCAGTTGGCTATTTTGCAAACTCATCCATCGGTGCGCCTGgcga                                                                                                                                                                                                  >  1:244259/1‑273 (MQ=255)                                                                                                       aTCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcgc                                                                                                                                                                                                   >  1:99465‑M1/1‑169 (MQ=255)                                                                                                             cATTGTGTTTTGTGGTCCTTCCACACGTGTCGCGATGCCCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTCATGCCGATTCAGCCCGCGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcgcaccgatggatgagtttgcaaattagccaactgagcaatgacgt                                                                                                                                                        <  1:170671‑M1/275‑113 (MQ=255)                                                                                                                  tgATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGCCAAAAGCTGCGNCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTAATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTCCGACATTGa                                                                                                                                                    >  1:307054/1‑274 (MQ=255)                                                                                                                        gtgGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTGTCCCACTGGCTGAGTTATGCCGATTCAGCCCGAGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCCgcgg                                                                                                                                                                                                                                                                       >  1:178090/1‑153 (MQ=255)                                                                                                                                            gcgATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCGGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACTGCTGGGTCTa                                                                                                                                                             <  1:328816/239‑1 (MQ=255)                                                                                                                                                              aGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcg                                                                                                                                                                                                    >  1:208112‑M1/1‑114 (MQ=255)                                                                                                                                                                  gTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcgcacc                                                                                                                                                                                                <  2:208106‑M1/182‑73 (MQ=255)                                                                                                                                                                   tCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGCACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATcgcagcttttgacgg                                                                                                                         <  1:212000‑M2/252‑16 (MQ=255)                                                                                                                                                                                 atatGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCAt                                                                                                                                                                                                                                                 >  2:122429/1‑118 (MQ=255)                                                                                                                                                                                     gcctgccGTCTCCCACTTGCTGCGTTATGCCGATTCAGCCCGCGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcgcacc                                                                                                                                                                                                <  1:108407‑M1/163‑73 (MQ=255)                                                                                                                                                                                     gcctgccGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCt                                                                                                                                                                                                                                             <  1:122431/118‑1 (MQ=255)                                                                                                                                                                                              ctcCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCG                                                                                                                                                                                                                                                                        <  1:33976‑M1/82‑1 (MQ=255)                                                                                                                                                                                                               aTGCCGATTCAGCCCGCGTCGGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAAttt                                                                                                                                                                                                                               >  2:123966/1‑107 (MQ=255)                                                                                                                                                                                                                 gCCGATTCAGCCCGCGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAgggg                                                                                                                                                                                       >  2:240798/1‑144 (MQ=255)                                                                                                                                                                                                                   cGATTCAGCCCGCGTCGGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCaa                                                                                                                                                                                                                           <  1:123968/107‑1 (MQ=255)                                                                                                                                                                                                                     aTTCAGCCCGCGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCAGTGCGCCTGGCGCTCGAAGAGGGGCGGa                                                                                                                                                                                   <  1:240805/144‑1 (MQ=255)                                                                                                                                                                                                                                             gcgcgcCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGTTACGTGAAAACGTCATTTCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGCCCTTGACAGCGgcatc                                                                                                                                          >  2:167759/1‑160 (MQ=255)                                                                                                                                                                                                                                                                  ccGTCAAAAGCTGCGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcgcaccgatggatgagtttgcaaattagccaactgagcaatgacgttttcacgtgccatcgccgcagcttttgacggtaaatcggaatgcgggcgcgcctcattaacgacgcgggctgaatcggcataacgcagccagtgggagacggcaggcatatggtccatgcactga                           <  1:212000‑M1/252‑238 (MQ=255)                                                                                                                                                                                                                                                                    gTCAAAAGCTGCGGCGATTGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGt  <  1:59789/275‑1 (MQ=255)                                                                                                                                                                                                                                                                               cGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcgcaccgat                                                                                                                                                                                             >  2:110810‑M1/1‑2 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                       TCTGTTCGTTATTCGCAACGCGGGCAATATCGTCCCTTCCTACGGGCCGGAACCCGGTGGCGTTTCTGCTTCGGTGGAGTATGCCGTCGCTGCGCTTCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTC‑GTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGT  >  CP009273/354677‑355209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.