New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	8 (0.460)	8 (0.460)	8/304	NT	42.1%	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	14 (0.810)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

TGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGG  >  CP009273/359874‑360370                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                           tgtgCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCg                                                                                                                                                                                                                                 <  1:270563/274‑1 (MQ=255)                                             cgTACTGTGAGCTAGAGTTGCGCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTGGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                                                                                                                                                    <  1:213205/275‑1 (MQ=255)                                                                                               cAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAGCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACCCAGGAGAGCGTTCACCGACAAACAACAGAAAAAACGaaaaaccc                                                                                                                                   >  1:332164/1‑269 (MQ=255)                                                                                                            tGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAACGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGcc                                                                                                                                                                                                                                             >  2:228754/1‑155 (MQ=255)                                                                                                                tACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAACGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGcc                                                                                                                                                                                                                                         <  1:228760/155‑1 (MQ=255)                                                                                                                        ctcccgtcggatttgtcctactcaggagtgcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc                                                                                                                                                                                                                        <  1:245915‑M1/53‑1 (MQ=255)                                                                                                                                            ctcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCACAACGTTCAANTCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTAACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTGTCGTTTAATTTGAAGActggggaagtg                                                                                     <  1:310735‑M1/184‑4 (MQ=255)                                                                                                                                                   cTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGCCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTCCTCAACGGTCAAAACCGCCCCCGGCGGATTTGTCGTCCTCAGGAGAGCGTTCCCCCACAACAAACTAATAAAACGAAAGACCCAACATTTCGACTGAGACCTCCGTGTTATTTGATGCCGGGGGGATTGGGagtta                                                                              >  2:318667/1‑275 (MQ=21)                                                                                                                                                                      ccAGCGCCACCAGCCCTTGCAGGTGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTTGCAGTTCATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGAAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTCTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAggg                                                           <  1:318678/275‑1 (MQ=255)                                                                                                                                                                                 aTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCt                                                                                                                              <  1:10098/197‑1 (MQ=255)                                                                                                                                                                                    aggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCCGGAGAGCGTTCACCGCCAAACCACAGATAAAAACAAAGACCAAGCCTTTCGACTGACCCTGTCGATCAATTAGATGCATGGGGAATTGGGAATAAATGCTTCACGCCGAatgtgcctcgggcatcaca                                             <  2:53896‑M1/224‑10 (MQ=255)                                                                                                                                                                                           gtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATg                                                                                                                                                                                                                                                           <  2:21102‑M1/18‑1 (MQ=255)                                                                                                                                                                                               ttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgg                                                                                                                                                                                                                                                       >  1:21102‑M1/41‑62 (MQ=255)                                                                                                                                                                                                          ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc                                                                                                                                   >  1:210253‑M1/30‑167 (MQ=255)                                                                                                                                                                                                                               ggggaattAATTCTTGGCAGTTTATGTCGGGCGTCCTGCCCGCCACCCCGCGGGCCGTTGCTTCGCAACGTTCAAAGCCGCTCCCGGCGGATTTGTCCTACTCAGGAGGGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAgg  >  1:53898‑M1/9‑275 (MQ=255)                                                                                                                                                                                                                               ggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTc                                                                                                                                                                              <  2:125235‑M1/95‑1 (MQ=255)                                                                                                                                                                                                                                   aattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGga                                                                                                                                                                          >  1:125237‑M1/5‑103 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                           TGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGG  >  CP009273/359874‑360370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.