New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 540211	14 (0.810)	4 (0.250)	3/286	NT	25.7%	coding (538/1236 nt)	allC	allantoate amidohydrolase
	?	CP009273	= 540303	10 (0.610)					coding (446/1236 nt)	allC	allantoate amidohydrolase

CGATAACCCATCGGCGTGGTGCCTGCATGGTTTGATTCGCCGTTCAGCGTTACCGTATAACGACGCTGCCCGACAATTGCATTCACCACGCCAATTGATTGCCCATTACTTTCCAGCACACAGCCCTGTTCAATATGCAGTTCAACAAAGGCTTTAATATCCTGACGCGGAGTTAGTGGGGCGTTCGGAAGAGTAAATCCGCAAGCCTTCATCGCATCGACAAAACTATTTCCTTTGGCATCACAGATATTCCGCACGTCGTCAGGATTCGCCAGCCCAAAAATATTTTTACTGCCCCAGAAGACATACGGGAAGCGGCTGCCTTCTTCTTCTGCCATCGCCACCACTTCGAC  >  CP009273/540045‑540397                                                                                                                                                                       |                                                                                                                                                                                           cgaTAACCCATCGGCGTGGTGCCTGCATGGTTTGATTCGCCGTTCAGCGTTACCGTATAACGACGCTGCCCGACAATTGCATTCACCACGCCAATTGATTGCCCATTACTTTCCAGCACACAGCCCTGTTCAATATGCAGTTCAACAAAGGCTTTAATATCCTGACGCGGAGTTAGTGGGGCGTTCGGAAGAGTAAATc                                                                                                                                                            >  1:22543/1‑199 (MQ=255)     aaCCCATCGGCGTGGTGCCTGCATGGGTTGATTCGCCGTTCAGCGTTACCGTATAACGACGCTGCCCGACAATTGCATTCACCACGCCAATTGATTGCCCATTACTTTCCAGCACACAGCCCTGTTCAATATGCAGTTCAACAAAGGCTTTAATATCCTGACGCGGAGTTAGTGGGGCGTTCGGAAGAGTAAATCCGCa                                                                                                                                                        <  2:22543/199‑1 (MQ=255)                             ggTTTGATTCGCCGTTCAGCGTTACCGTATAACGACGCTGCCCGACAATTGCATTCACCACGCCAATTGATTGCCCATTACTTTCCAGCACACAGCCCTGTTCAATATGCAGTTCAACAAAGGCTTTAATATCCTGACGCgg                                                                                                                                                                                         <  1:104071/142‑1 (MQ=255)                                                                               gCATTCACCACGCCAATTGATTGCCCATTACTTTCCAGCACACAGCCCTGTTCAATATGCAGTTCAACAAAGGCTTTAATATCCTGACGacgtgcggaatatctgtgatgccaaaggaaatagttttgtcgatgcgatgaaggcttgcggatttactcttcc                                                                                                                   >  2:144190‑M1/1‑89 (MQ=255)                                                                               gCATTCACCACGCCAATTGATTGCCCATTACTTTCCAGCACACAGCCCTGTTCAATATGCAGTTCAACAAAGGCTTTAATATCCTGACGCGGAGTTAGTGGGGCGTTCGGAAGAGTAAATCCGGAAGCCTGCAGCGCATCGACAAAACTGTTTCCTTTGGCAGCACAGATATTCCGCACGTCGTCAGGATTCGCCCGCCCAAAAATATTTTTACTGCCACATAACACCAACGTGAAGCGTCCGCCTCCTTCTTCTGCCATCCCCCNCACttgctc  >  2:121958/1‑271 (MQ=255)                                                                                   tCACCACGCCAATTGATTGCCCATTACTTTCCAGCACACAGCCCTGTTCAATATGCAGTTCAACAAAGGCTTTAATATCCTGACGacgtgcggaatatctgtgatgccaaaggaaatagttttgtcgatgcgatgaaggcttgcggatttactcttccgaac                                                                                                               <  1:144193‑M1/162‑78 (MQ=255)                                                                                     accacGCCAATTGATTGCCCATTACTTTCCAGCACACAGCCCTGTTCAATATGCAGTTCAACAAAGGCTTTAATATCCTGACGacgtgcggaatatctgtgatgccaaaggaaatagttttgtcgatgcgatgaaggcttgcggatttactcttcc                                                                                                                   >  2:143786‑M1/1‑83 (MQ=255)                                                                                         cGCCAATTGATTGCCCATTACTTTCCAGCACACAGCCCTGTTCAATATGCAGTTCAACAAAGGCTTTAATATCCTGACGacgtgcggaatatctgtgatgccaaaggaaatagttttgtcgatgcgatgaaggcttgcggatttactcttccgaac                                                                                                               <  1:143789‑M1/156‑78 (MQ=255)                                                                                                                            cccTGTTCAATATGCAGTTCAACAAAGGCTTTAATATCCTGACGCGGAGTTAGTGGGGCGTTCGGAAGAGTAAATCCGCAAGCCTTcatcgca                                                                                                                                           >  1:174534/1‑93 (MQ=255)                                                                                                                                gTTCAATATGCAGTTCAACAAAGGCTTTAATATCCTGACGCGGAGTTAGTGGGGCGTTCGGAAGAGTAAATCCGCAAGCCTTCATCGCATCGa                                                                                                                                       <  2:174530/93‑1 (MQ=255)                                                                                                                                      tatGCAGTTCAACAAAGGCTTTAATATCCTGACGCGGAGTTAGTGGGGCGTTCGGAAGAGTAAAt                                                                                                                                                             >  2:78122/1‑65 (MQ=255)                                                                                                                                          cAGTTCAACAAAGGCTTTAATATCCTGACGCGGAGTTAGTGGGGCGTTCGGAAGAGTAAATCCGc                                                                                                                                                         <  1:78124/65‑1 (MQ=255)                                                                                                                                           aGTTCAACAAAGGCTTTAATATCCTGACGCGGAGTTAGTGGGGCGTTCGGAAGAGTAAATCCGCAAGCCTTCATCGCATCGACAAAACTATTTCCTTTGGCATCACAGATATTCCGCACGTCGTCAGGATTCGcc                                                                                  >  2:104284/1‑135 (MQ=255)                                                                                                                                           aGTTCAACAAAGGCTTTAATATCCTGACGCGGAGTAAGAGGGGCGTTCGGAAGAGTAAATCCGCAAGCCTTCATCGCATCGACAAAACTATTTCCTTTGGCATCACAGATATTc                                                                                                       >  1:126065/1‑114 (MQ=255)                                                                                                                                               caacaaAGGCTTTAATATCCTGACGCGGAGTTAGTGGGGCGTTCGGAAGAGTAAATCCGCAAGCCTTCATCGCATCGACAAAACTATTTCCTTTGGCATCACAGATATTCCGCACGTCGTCAGGATTCGCCAGcc                                                                              <  1:104286/135‑1 (MQ=255)                                                                                                                                               caacaaAAGCTTTACTATCCTGACGCGGAGTTAGTGGGGCGTTCGGAAGAGTAAATCCGCAAGCCTTCATCGCTTCGACAAAACTATTTCCTTTGGCATCACAGATATTCCGCa                                                                                                   <  2:126063/114‑1 (MQ=255)                                                                                                                                                     aGGCTTTAATATCCTGACGCGGCGTTAGTGGGGCGTTCGGAAGAGTAAATCCGCAAGCCTTCATCGCATCGACAAAACTATTTCCTTTGGCATCACAGATATTCCGCACGTCGTCAGGATTCGCCAGCCCAAAAATAttt                                                                   >  2:212808/1‑140 (MQ=255)                                                                                                                                                         tttAATATCCTGACGCGGAGTTAGTGGGGCGTTCGGAAGAGTAAATCCGCAAGCCTTCATCGCATCGACAAAACGATTTCCTTTGGCATCACAGATATTCCGCACGTCGTCAGGATTCGCCAGCCCAAAAATATTTTTAc                                                               <  1:212814/140‑1 (MQ=255)                                                                                                                                                                 tcTGACGCGGAGGTAGTGGGGCGTTAGGACGAGTAAATCCGCAAGCCTTcat                                                                                                                                               >  2:20827/2‑52 (MQ=255)                                                                                                                                                                   tGACGCGGAGTTAGTGGGGCGTTCGGAATAGTAAATCCGCAAGCCTTCATCGCATCGACAAAACTATTTCCTTTGGCATCACAGATATTCCGCACGTCGTCAGGATTCGCCAGCCCAAAAATATTTTTACTGCCCCagaa                                                     >  1:257748/1‑140 (MQ=255)                                                                                                                                                                     acgacgtgcggaatatctgtgatgccaaaggaaatagttttgtcgatgcgatgaaggcttgcggctttactcttcc                                                                                                                   >  1:247658‑M1/1‑3 (MQ=255)                                                                                                                                                                     acgacgtgcggaatatctgtgatgccaaaggaaatagttttgtcgatgcgatgaaggcttgcgga                                                                                                                              >  2:30681‑M1/1‑3 (MQ=255)                                                                                                                                                                     aCGCGGAGTTAGTGGGGCGTTCGGAAGAGTAAATCCGCAAGCCTTcatcgca                                                                                                                                           <  1:20827/52‑1 (MQ=255)                                                                                                                                                                       |                                                                                                                                                                                           CGATAACCCATCGGCGTGGTGCCTGCATGGTTTGATTCGCCGTTCAGCGTTACCGTATAACGACGCTGCCCGACAATTGCATTCACCACGCCAATTGATTGCCCATTACTTTCCAGCACACAGCCCTGTTCAATATGCAGTTCAACAAAGGCTTTAATATCCTGACGCGGAGTTAGTGGGGCGTTCGGAAGAGTAAATCCGCAAGCCTTCATCGCATCGACAAAACTATTTCCTTTGGCATCACAGATATTCCGCACGTCGTCAGGATTCGCCAGCCCAAAAATATTTTTACTGCCCCAGAAGACATACGGGAAGCGGCTGCCTTCTTCTTCTGCCATCGCCACCACTTCGAC  >  CP009273/540045‑540397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.