New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	928048 =	20 (1.160)	4 (0.240)	3/290	NT	20.5%	intergenic (‑542/‑3)	trxB/lrp	thioredoxin reductase, FAD/NAD(P)‑binding/leucine‑responsive global transcriptional regulator
	?	CP009273	928258 =	12 (0.730)					coding (208/495 nt)	lrp	leucine‑responsive global transcriptional regulator

CGCATAACCATGCATGTAAATACCATGTTTACCGTGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGATGTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACAGGAGTAGGGAAGGAATACAGAGAGACAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATGGGCGTATTTCTAACGTCGAGCTTTCTAAACGTGTGGGACTTTCCCCAACGCCGTGCCTTGAGCGTGTGCGTCGGCTGGAAAGACAAGGGTTTATTCAGGGCTATA  >  CP009273/927812‑928234                                                                                                                                                                                                                                             |                                                                                                                                                                                           cgcATAACCATGCATGTAAATACCATGTTTACCGTGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGATGTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGACTCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCATGGTCAGATCGGAGGAGGGAAGGAATACAGAGAGACAATAATAAGGGTAGATAGCAAGAAGCGCCCTGGCAAAGagtca                                                                                                                                                      >  2:314750/1‑271 (MQ=255)                          tGTTTACCGTGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGATGTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACAGGAGTAGGGAAGGAATACAGAGAGACAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTAACGATCGTAACAATTTTa                                                                                                                             >  2:109449/1‑275 (MQ=255)                                                tACGTATGGCGTGGACAGACGCCATTCGTGATGTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTACAGGGACAGACAGGAGTAGGGAAGGAATACAGAGAGACAAAAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTAACAATCGTAACATTATTAATGAGTTGAAAAAGGATGGGCg                                                                                                       >  1:300819/1‑275 (MQ=255)                                                                  aCGCCATTCGTGATGTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACAGGAGTAGGGAAGGAATACAGAGAGACaataat                                                                                                                                                                                           >  1:334888/1‑173 (MQ=255)                                                                      cATTCGTGATGTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACAGGAGTAGGGAAGGAATACAGAGAGACAATAATAATg                                                                                                                                                                                       <  2:334876/173‑1 (MQ=255)                                                                                           ccACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACAGGAGTAGGGAAGGAATACAGAGAGACAATAATAATGGTAGATAGCAAGAAGCGCCCt                                                                                                                                                                  >  2:100928/1‑173 (MQ=255)                                                                                               aaGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACAGGAGTAGGGAAGGAATACAGAGAGACAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCa                                                                                                                                                              <  1:100930/173‑1 (MQ=255)                                                                                                  ggtagtcgaaatcaccggatactaaatgacactcctgaatttcttcaagtttttgtacagcggtattgaattgttcaaacacatccggtgcgccacgattcagagtaatctcaacgaataccagaagtgatgcatccagATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATGGGCGTATTTCTAACGTCGAGCttt                                                                                   <  1:14473‑M1/106‑1 (MQ=255)                                                                                                      gtcgaaatcaccggatactaaatgacactcctgaatttcttcaagtttttgtacagcggtattgaattgttcaaacacatccggtgcgccacgattcagagtaatctcaacgaataccagaagtgatgcatccagATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATGGGCGTATTTCTAACGTCGAGCTTTCTaa                                                                               >  2:14473‑M1/136‑245 (MQ=255)                                                                                                                       aCCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACAGGAGTAGGGAAGGAATACAGAGAGACaataataa                                                                                                                                                                                         <  2:77783/122‑1 (MQ=255)                                                                                                                            ggCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACAGGAGTAGGGAAGGAATACAGAGAGACAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATg                                                                                                                          >  1:250313/1‑180 (MQ=255)                                                                                                                            ggCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGCCAGACAGGAGTAGGGAAGGAATACAGAGAGACAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTAGCGATCGTAACATTCTTAATGAGTTGCAAAAGGATGGGCGTATTGCTAACGTCGAGCTTTCTAAACGTGTGGTACTTTCCGCAAAGCCTTGCCTTGAGCCTTTGTGGCGGCTGGaa                           >  2:74591/1‑275 (MQ=255)                                                                                                                                ttGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACAGGAGTAGGGAAGGAATACAGAGAGACAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGtt                                                                                                                      <  2:250305/180‑1 (MQ=255)                                                                                                                                 tGCGCGCCGTTAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACAGCAGTAGGGAAGGAATACAGAGAGACAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATGGGCGTATTTCTAACGTCGAGCTTTCTAAACGTGTGGGCCTTTCCCCAACGCCGTGCCTTGAGCGTGTGCGTCGGCTGGAAAGACa                      <  1:314761/275‑1 (MQ=255)                                                                                                                                            cttcaagtttttgtacagcggtattgaattgttcaaacacatccggtgcgccacgattcagagtaatctcaacgaataccagaagtgatgcatccagATAATGGTTGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATGGGCGTATTTCTAACGTCGAGCttt                                                                                   <  1:27576‑M1/106‑1 (MQ=255)                                                                                                                                            aagtttCTTGATGTCGGTGTGTCGTGACGGGTAGCGACTCGGTAGAGTGATGTTTCAGGGTCAGACAGGAGTAGGGAAGGAATACAGAGAGACAATAATAATTGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATGGGCGTATTTCTAACGTCGAGCTTTCTAAACGTGTGGGACTTGCCCCAAAGCCGTGCCTTGAGCGTGTGCGTCGGATGGAAAGACAAGGGTTTAtt            <  2:300808/270‑1 (MQ=255)                                                                                                                                            aaTCTTCATGATTTCGGTCTATCGTGACGGGTAGCGAATCTGAACAGTGATGTTTCAGGGTCAGACAGGAGTAGGGAAGGAATACAGAGAGACAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATGGGCGTATTTCTAACGTCGAGCTTTCTAAACGTGTGGGACTTTCCCCAACGCCGTGCCTTGAGCGTGTGCGTCGGCTGGAAAGACAAGGGTTTAtt            <  1:109451/274‑1 (MQ=255)                                                                                                                                                aagtttttgtacagcggtattgaattgttcaaacacatccggtgcgccacgattcagagtaatctcaacgaataccagaagtgatgcatccagATAATGGTTGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATGGGCGTATTTCTAACGTCGAGCTTTCTaa                                                                               >  2:27576‑M1/94‑203 (MQ=255)                                                                                                                                                     gATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACAGGAGTAGGGAAGGAATACAGAGAGACAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGAGCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATGGGCGTATTTCTAACGTCGAGCTTTCTAAACGTGTGGGACTTTCCCCAACGCCGTGCCTTGAGCGTGTGCGTCGGCTGGAAAGACAAGGGTTTATTCAGGGCtata  <  1:74593/275‑1 (MQ=255)                                                                                                                                                                        ttgttcaaacacatccggtgcgccacgattcagagtaatctcaacgaataccagaagtgatgcatccaga                                                                                                                                                                                            <  2:19001‑M1/1‑1 (MQ=255)                                                                                                                                                                           ttcaaacacatccggtgcgccacgattcagagtaatctcaacgaataccagaagtgatgcatccaga                                                                                                                                                                                            <  2:89948‑M1/1‑1 (MQ=255)                                                                                                                                                                           tAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACAGGAGTAGGGAAGGAATACAGAGAGACAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATg                                                                                                           >  2:224289/1‑148 (MQ=255)                                                                                                                                                                            tcaaacacatccggtgcgccacgattcagagtaatctcaacgaataccagaagtgatgcatccagATAAt                                                                                                                                                                                        >  1:19001‑M1/66‑70 (MQ=255)                                                                                                                                                                               gACTCTGAACAGTGATGTTTCAGGGTCAGACAGGAGTAGGGAAGGAATACAGAGAGACAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATGGGCg                                                                                                       <  1:224295/148‑1 (MQ=255)                                                                                                                                                                               aacacatccggtgcgccacgattcagagtaatctcaacgaataccagaagtgatgcatccagATAAt                                                                                                                                                                                        >  1:89950‑M1/63‑67 (MQ=255)                                                                                                                                                                                                                gAGTAGGGAAGGAATACAGAGAGACAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATGGGCGTATTTCTAACGTCGAGCTTTCTAAACGTGTGGGACTTTCCCCAACGCCGTGCCTTGAGCGTGTGCGTCGGc                                >  1:200626/1‑186 (MQ=255)                                                                                                                                                                                                                      ggaaggaaTACAGAGAGACAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATGGGCGTATTTCTAACGTCGAGCTTTCTAAACGTGTGGGACTTTCCCCAACGCCGTGCCTTGAGCGTGTGCGTCGGCTGGAAAGACAAGGGTTTATTc           >  2:110592/1‑201 (MQ=255)                                                                                                                                                                                                                          ggaaTACAGAGAGACAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATGGGCGTATTTCTAACGTCGAGCTTTCTAAACGTGTGGGACTTTCCCCAACGCCGTGCCTTGAGCGTGTGCGTCGGCTGGAAAGACAAGGGTTTATTCAggg       <  1:110594/201‑1 (MQ=255)                                                                                                                                                                                                                                     agaCAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTatcgatc                                                                                                                                         >  2:156250/1‑60 (MQ=255)                                                                                                                                                                                                                                      gaCAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATg                                                                                                           >  1:236687/1‑89 (MQ=255)                                                                                                                                                                                                                                         aataataatGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTaa                                                                                                                                     <  1:156254/60‑1 (MQ=255)                                                                                                                                                                                                                                          ataataatGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATGGGCg                                                                                                       <  2:236680/89‑1 (MQ=255)                                                                                                                                                                                                                                             |                                                                                                                                                                                           CGCATAACCATGCATGTAAATACCATGTTTACCGTGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGATGTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACAGGAGTAGGGAAGGAATACAGAGAGACAATAATAATGGTAGATAGCAAGAAGCGCCCTGGCAAAGATCTCGACCGTATCGATCGTAACATTCTTAATGAGTTGCAAAAGGATGGGCGTATTTCTAACGTCGAGCTTTCTAAACGTGTGGGACTTTCCCCAACGCCGTGCCTTGAGCGTGTGCGTCGGCTGGAAAGACAAGGGTTTATTCAGGGCTATA  >  CP009273/927812‑928234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.