New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1203261	0 (0.000)	7 (0.450)	7/272	NT	100%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	= 1205058	0 (0.000)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

CCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACAACCACTTCGT  >  CP009273/1203032‑1203521                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                     ttagacgttttttccctcccgacctttcgtactttgtccctcttattttgtcttcaaaactcagcttgcatcctgtacatttcagctcattaatttgtagatctgtgttctggttatttgttgatactcgtacttagccaataagcatgttaaatccccctggtaaaagcaggaatggtgccatttgcttgttatttcttcattttcataaccgGTGGTTTGGGAGGAGGAGCAATACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt                                                                                                                                                                                                                         >  2:68058‑M1/215‑275 (MQ=255)                                             ttacaTGTTTCAGGAGGAACTTGGCGGCGTGGTGGGGGCAGCCGGTGCCAGCCTGGAGAAGGGGCGGTACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCAGTTTGGCGATATCAAATCGTATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctg                                                                                                                                                                             <  2:4349‑M1/273‑90 (MQ=255)                                                    ttGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCAGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaaaggtgccgctttttctgctgaag                                                                                                                                                                       >  1:92260‑M1/1‑179 (MQ=255)                                                                     ccccgtgGTGGGGTCATCCGGGCCCTGCGTGGATAAGGTGCGGCCCGACCAGTTTCTTCCCGCACTTCTCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGTTATCAAATCGGATGGCACTGTGCAAACTGCTCTCGAAAACCTTGGTTTGTGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggca                                                                                                                                                      <  2:92258‑M1/271‑113 (MQ=255)                                                                               gAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGAACATTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAATAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatcc                                                                                                                                           <  1:156180‑M1/275‑124 (MQ=255)                                                                                                   agatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                                                                                                                                                     <  1:62422‑M1/49‑1 (MQ=255)                                                                                                       ctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc                                                                                                                                                                                                                                 >  2:62420‑M1/113‑165 (MQ=255)                                                                                                                 gtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGAAAAAGCATCGGCCTTGGGGGGGGATGGAAGTGCTGTtgtagta                                                                                                         <  2:148998‑M1/173‑4 (MQ=255)                                                                                                                     tttgttgatatgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCa                                                                                                                                                                                     >  1:166962‑M1/99‑195 (MQ=255)                                                                                                                                        agccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa                                                                                                                                                                                                                                                                 <  2:168751‑M1/21‑1 (MQ=255)                                                                                                                                        agccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAt                                                                                                                                                                                           <  2:201549‑M1/91‑1 (MQ=255)                                                                                                                                          ccaataagcatgttaaatccccctggcaaaagcacgaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt                                                                                                                                                                                                          <  1:215596‑M1/76‑1 (MQ=255)                                                                                                                                            aataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACt                                                                                                                                                                                                                                                             >  1:168755‑M1/76‑100 (MQ=255)                                                                                                                                            aataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAg                                                                                                                                                                                       >  1:201555‑M1/76‑170 (MQ=255)                                                                                                                                              gtagcatgttaaatccccctggtaaaagcaggaattatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGACGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATg                                                                                                                                                                                                      >  2:215590‑M1/74‑153 (MQ=255)                                                                                                                                                         aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCa                                                                  >  1:149001‑M1/63‑274 (MQ=255)                                                                                                                                                                         ggCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagtttattcgtggctgggatgacgggcggggattgatacaggtcgctctattttaagtatt                                                 <  1:196413‑M1/275‑214 (MQ=255)                                                                                                                                                                                    aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaataccc                                                                                                                                                                >  1:217348‑M1/1‑51 (MQ=255)                                                                                                                                                                                        gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaa                                                                                                                                                            <  2:217342‑M1/153‑107 (MQ=255)                                                                                                                                                                                          tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCt                                                                                                                                                                                                                  <  1:19862‑M1/68‑1 (MQ=255)                                                                                                                                                                                              tgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAc                                                                                                                                                                                                              >  2:19862‑M1/26‑97 (MQ=255)                                                                                                                                                                                                                        TGGTTTGGGGTAATGAGCAATACTTAATGTAGTAACGGCGACATTAGGAGGCACCGGTTTCCTAGCGATACCGGTGATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCGGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCTGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACTACCACTTCGt  >  1:336665‑M1/1‑275 (MQ=255)                                                                                                                                                                                                                        TGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                                                                                                                                                     <  2:151149‑M1/48‑1 (MQ=255)                                                                                                                                                                                                                          GTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa                                                                                                                                                                                                                                    <  1:210479‑M1/47‑1 (MQ=255)                                                                                                                                                                                                                            TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc                                                                                                                                                                                                                                 >  1:151153‑M1/1‑48 (MQ=255)                                                                                                                                                                                                                              GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCa                                                                                                                                                                                                                                >  2:210473‑M1/1‑47 (MQ=255)                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                     CCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACAACCACTTCGT  >  CP009273/1203032‑1203521

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.