New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1413126 =	10 (0.580)	6 (0.360)	3/292	NT	40.5%	coding (199/489 nt)	sieB	Rac prophage; phage superinfection exclusion protein
	?	CP009273	1413206 =	8 (0.480)					coding (279/489 nt)	sieB	Rac prophage; phage superinfection exclusion protein

GTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCA  >  CP009273/1412887‑1413303                                                                                                                                                                                                                                                |                                                                                                                                                                                  gtgtTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTNGAAATACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAATATTGCGAGCACCTATTCAAAAGCattat                                                                                                                                                <  1:240001/275‑1 (MQ=255)                                agTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCattat                                                                                                                                                >  2:93612/1‑244 (MQ=255)                                    aTTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCAt                                                                                                                                            <  1:93614/244‑1 (MQ=255)                                                                      aaCTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTNGCATTCAATGCTTATACTGTAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTc                                                                           <  1:255143/275‑1 (MQ=255)                                                                                                           taCGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATCCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCACGTTTGCGAGCACATATTCaaa                                                                                                                                                        >  2:234426/1‑161 (MQ=255)                                                                                                               aTTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTGGCAATCTCGCGAGTACATATTCAAAAGCa                                                                                                                                                    <  1:234433/161‑1 (MQ=255)                                                                                                                ttATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAACAGCATTATTCATTACTACCAGAGCCACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAATCTTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTTCCGtca                                  >  1:82378/1‑272 (MQ=255)                                                                                                                                               aCCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTACTTGCCGTAACCCGGTTATGAAAAAATTAGAACGAAAGGGca  >  1:196771/1‑275 (MQ=255)                                                                                                                                                         tctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                         <  1:36697‑M1/59‑1 (MQ=255)                                                                                                                                                         tctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                         <  1:49731‑M1/59‑1 (MQ=255)                                                                                                                                                             attttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                     >  2:36697‑M1/84‑146 (MQ=255)                                                                                                                                                             attttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                     >  2:49730‑M1/84‑146 (MQ=255)                                                                                                                                                                                                    ttCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAg                                                                                                                                                                    >  1:56458/1‑60 (MQ=255)                                                                                                                                                                                                        gATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGcaca                                                                                                                                                                <  2:56456/60‑1 (MQ=255)                                                                                                                                                                                                                       gaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                         <  1:38653‑M1/59‑1 (MQ=255)                                                                                                                                                                                                                           tctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                     >  2:38653‑M1/22‑84 (MQ=255)                                                                                                                                                                                                                                                |                                                                                                                                                                                  GTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCA  >  CP009273/1412887‑1413303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.