New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1692236	14 (0.810)	3 (0.180)	3/290	NT	17.0%	coding (62/768 nt)	hdhA	7‑alpha‑hydroxysteroid dehydrogenase, NAD‑dependent
	?	CP009273	= 1692384	16 (0.970)					intergenic (‑87/+25)	hdhA/malI	7‑alpha‑hydroxysteroid dehydrogenase, NAD‑dependent/transcriptional repressor of Mal regulon

CCGCCACCGGCGTTGTTAACCAGAATATCAACTTTACCCAGCTTACTGATAGCAAAGTCTGCCAGTGCAGAGAGTTCCTGTTCGGAAGTAATATCACAACGGCAGGCAAATGCCTGACCACCCAGTTGTTGAATTTCGTCTACAACATGGTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGTTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAGCAGATAAAGAGAGGATTATTTCGCTGCAATGAGCCGGGCGGGAATAATAAGATTGCGTGAATGCGTCTCTTCATGGGTGATTTTTTGCATCATGCGATCCGCAAGTGTGATACC  >  CP009273/1692002‑1692507                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                ccgccaccgGCGTTGTTAACCAGAATATCAACTTTACCCAGCTTACTGATAGCAAAGTCTGCCAGTGCAGAGAGTTCCTGTTCGGAAGTAATATCACAACGGCAGGCAAATGCCTGACCACCCAGTTGTTGAATTTCGTCTACAACATGGTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGtct                                                                                                                                                                                                                                         >  1:185877/1‑275 (MQ=255) ccgccaccgGCGTTGTTAACCAGAATATCAACTTTACCCAGCTTACTGATAGCAAAGTCTGCCAGTGCAGAGAGTTCCTGTTCGGAAGTAATATCACAACGGCAGGCAAATGCCTGACCACCCAGTTGTTGAATTTCGTCTACAACATGGTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGATGTCGCGACTGTAATGCCGATTTCTTTACCAATACCTGCACCCGCACCTGTTCTGATGGCGCANTTTCCTTCTAGtca                                                                                                                                                                                                                                         >  2:249914/1‑274 (MQ=255)                                              aggaaaGCAAAGGCTGCCAGGGCAGAGATTTCCTGTTCGGAAGGAATATCACAACGGCAGGCAAATGCCTGACCACCCAGTTGTTGAATTTCGTCTACAACATGGTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGTTGTCAGAATTAAACACATAAACCTCCTGTGAACTTGAGTa                                                                                                                                                                                            <  2:185873/270‑1 (MQ=255)                                                                      gagagTTCCTGTTCGGAAGTAATATCACAACGGCAGGCAAATGCCTGACCACCCAGTTGTTGAATTTCGTCTACAACATGGTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGTTGTCAGAATTAAACACAt                                                                                                                                                                                                                  >  1:42762/1‑229 (MQ=255)                                                                          gTTCCTGTTCGGAAGTAATATCACAACGGCAGGCAAATGCCTGACCACCCAGTTGTTGAATTTCGTCTACAACATGGTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCATGTTGTCAGAATTAAACACATAAAc                                                                                                                                                                                                              <  2:42761/229‑1 (MQ=255)                                                                            tCCTATTCGGAAGTAATATCACAACGGCAGGCAAATGCCTGACCACCCAGTTGTTGAATTTCGTCTACAACATGGTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGTAGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCcaca                                                                                                                                                               >  1:327043/1‑274 (MQ=255)                                                                                                   aCGGCAAGGCAATGCCTTACCCCCCAGTTGTTGAATTTCGTCTAAAACATGGTTAGCTGCTTCGGCGTTAATATCACTGACCACCACAGATGCTCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGgtagtgtcctttcctcaaggttaatgataaaaaatgtggcacacaggcggtgccttttatttttactgaagttcacaggaggtttatgtgtttaattctgacaacctgagactcgacggaaaatgcgccatcatcaca                                                                                                                                       <  2:143379‑M1/275‑139 (MQ=255)                                                                                                              ctGCCTGACCACGCAGTTGCTGAATTTCGTCTACCACGTTGTTAGCTGCCACCGCGTGAATATCCCTTACTACCCCAGTTACGCCAGCTGTCGCGGATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGTTGTCAGAATTAAACAAATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGCAACAGCCTGTGTGCCACTTTTTTTATCATTAACCTTGAGGaactctctcg                                                                                                                               >  2:87145/2‑264 (MQ=255)                                                                                                                  cTGACCACCCAGTTGTTGAATTTCGTCTACAACATGGTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGTTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTa                                                                                                                                                  <  1:87147/249‑1 (MQ=255)                                                                                                                               tgttgAATTTCGTCTACAACATGG‑TAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGgtagtgtcctttcctcaaggttaatgataaaaaatgtggcacacaggcggtgccttttatttttactgaagttcacaggaggtttatgtgt                                                                                                                                                                                      >  2:38389‑M1/1‑108 (MQ=255)                                                                                                                                   gAATTTCGTCTACAACATGG‑TAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGgtagtgtcctttcctcaaggttaatgataaaaaatgtggcacacaggcggtgccttttatttttactgaagttcacaggaggtttatgtgtttaa                                                                                                                                                                                  <  1:38389‑M1/199‑96 (MQ=255)                                                                                                                                    aaTTTCGTCTACAACATGGTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGTAGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAGCAGATAAagagag                                                                                                       <  2:327031/274‑1 (MQ=255)                                                                                                                                      tttCGTCTACAACATGGTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCCCCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGTTGTCAGACTTAAACACATAACCCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAACGGACCCCACCAGGTATAGCATCTaaaatgatttt                                                                                                    >  2:283500/1‑267 (MQ=255)                                                                                                                                                                                  accaccACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGTTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCAcc                                                                                                                                                                             >  1:9028/1‑158 (MQ=255)                                                                                                                                                                                    caccacCGATGCGCCACCTGTCGCGAATGTAATGGCGATTTCTTGACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCCGGTTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTCCCACATTTTTTATCATTANCCTTGAGGAAAGGac                                                                                                                                  >  1:240506/1‑199 (MQ=255)                                                                                                                                                                                      ccacAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGTTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCt                                                                                                                                                                         <  2:9028/158‑1 (MQ=255)                                                                                                                                                                                      ccacAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGTTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACc                                                                                                                            >  1:12553‑M2/1‑202 (MQ=255)                                                                                                                                                                                                               tGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGTTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATNAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAGCAGATAAAGAGAGGATTATTTCGCTGCAATGAGCCGGGCGGGAATAATAAGATTGCGTGAATGCGTCTCTTCATGGGTGAtttttt                              <  1:283511/272‑1 (MQ=255)                                                                                                                                                                                                                                       aCCTGgtagtgtcctttcctcaaggttaatgataaaaaatgtggcacacaggcggtgccttttat                                                                                                                                                                                                                     <  1:109590‑M1/65‑61 (MQ=255)                                                                                                                                                                                                                                        ccTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGTTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAGCAGATAAAGAGAGGATGATTTCGCTGCAATGAGCCGGGCGGGAATAATAAGATTGCGTGAATGCGTCTCTTCATGGGTGATTTTTTGCATCATGCGATCCGCAAGTGTGATAcc  >  1:190483/1‑275 (MQ=255)                                                                                                                                                                                                                                           ggtagtgtcctttcctcaaggttaatgataaaaaatgtggcacacaggcggtgccttttatttttactgaagttcacaggaggtttatgtgtttaattctgacaacctgagactcgacggaaaatgcgccatcatcacaggtgcgggtgcaggtattggtaaagaaatcgccattacattcgcgacagctggcgcatctgtgg                                                                       >  1:12553‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                CCGCCACCGGCGTTGTTAACCAGAATATCAACTTTACCCAGCTTACTGATAGCAAAGTCTGCCAGTGCAGAGAGTTCCTGTTCGGAAGTAATATCACAACGGCAGGCAAATGCCTGACCACCCAGTTGTTGAATTTCGTCTACAACATGGTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGTTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAGCAGATAAAGAGAGGATTATTTCGCTGCAATGAGCCGGGCGGGAATAATAAGATTGCGTGAATGCGTCTCTTCATGGGTGATTTTTTGCATCATGCGATCCGCAAGTGTGATACC  >  CP009273/1692002‑1692507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.