New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1775174	17 (0.980)	3 (0.180)	3/298	NT	18.4%	coding (517/939 nt)	ydiR	putative electron transfer flavoprotein, FAD‑binding subunit
	?	CP009273	= 1775370	10 (0.590)					coding (713/939 nt)	ydiR	putative electron transfer flavoprotein, FAD‑binding subunit

AGCGCTGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGT‑TCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGA  >  CP009273/1774933‑1775435                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                       aGCGCTGGCAGCACGGTTAAGTGTGCAAGTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCNTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGa                                                                                                                                                                                                                                       >  1:240213/1‑275 (MQ=255)                  tAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTCTGGCGGGCTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCCGTGTTCAGGAACCGTGCACCAGTGCTCCCTCTCATCAGTCCCCGAAACAAACGGTACCTTATGTTGCTCCGCGTCCTGCAATTCCCTGTCGGGCACCCCGTGCGGCAGCCGCAcgcagccg                                                                                                                                                                                                                       >  2:99236/1‑272 (MQ=255)                        tgCAACTGAATGCGGCGCTGGTGAACGATGCCAGGGCGGTGGATATTGTTGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCt                                                                                                                                                                                                                 <  1:99238/274‑1 (MQ=255)                                           ggTGAACGATGCCACGGCGGTGGATATTGTCGATTGTCACATTTGCGCCGAACTCCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTgg                                                                                                                                                                                             <  1:200987/275‑1 (MQ=255)                                            aagaaGGAGGCCACGGCGGTGGTTTTTGTTGCTGGTCAGAGTGGAGCCGAAAACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATGAACAGCCCGCTGGGGATCATTACCATTGCAACCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCtccatccagttctcgccttcggcaattggacgtgaacagccgacttcagcattcagcaccgccgccagttcgtgg                                                                                                                                                                                             <  2:85525‑M1/272‑76 (MQ=255)                                                   aggacgcggcggTGGAGATGGTGTCGGGTCACTTTTGCGCCGGACACCGGATGTTTGTCGGGTTAGCTTGGGCACAGGAAAAGATCAAGAGCCCTCGGGCGATCATTACCATTGGGGCAGGGTGTCAGGAACCGTGAACCCGTGATCCCGCTTAGCAGGGGCCGACAGAGTGGGTACCATATGGTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGCAGGCTGCAAGTAGCGTGGATCTGAGCGAAGCAAAACGTGTGGTTGGCga                                                                                                                                                                                      <  2:284006/268‑2 (MQ=255)                                                              gTGGATATTGTCGATTGTCACATCTGCGCGGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTNATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAAAGTGTGGTTg                                                                                                                                                                                          >  1:232641/1‑259 (MQ=255)                                                                                                         gtGGAGGGGTANNGGTCCCCCAGGAAAACACCAACATCCCGCGTGCGTACATTACCCGTGCACCCGTTGTTCAGGAACCGGGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTggcgg                                                                                                                                 <  2:240206/272‑1 (MQ=255)                                                                                                                                      aTCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACCGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAgcaaagcaaa                                                                                                                                                                                                     >  2:189618/1‑176 (MQ=255)                                                                                                                                          aCAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACgt                                                                                                                                                                                                 <  1:189622/176‑1 (MQ=255)                                                                                                                                                                    gCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTg                                                                                                                                                                                          >  2:5289/1‑157 (MQ=255)                                                                                                                                                                    gCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTg                                                                                                                                                                                          >  1:170930/1‑157 (MQ=255)                                                                                                                                                                        ccGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCgt                                                                                                                                                                                      <  1:5289/157‑1 (MQ=255)                                                                                                                                                                        ccGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCgt                                                                                                                                                                                      <  2:170926/157‑1 (MQ=255)                                                                                                                                                                            tgtTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGCCAGAAACGGTACCTTATGTTGCTCCGCGTCATGCAATTCTCTGTCGCGAACGCCGTGCGAAAGCAGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGGCTGGCTGCGCAGGAGGACCTAAAAATGGACCACGAACTGGCGGCGGTGTTAAAGGCTGAAGTCGGCTGTATCA‑TTCCAATTCCCGCAGTGGAGAAAtggatttatctggc                                                             >  2:37794/1‑264 (MQ=255)                                                                                                                                                                            tgtTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCtccatccagttctcgccttcggcaattggacgtgaacagccgacttcagcattcagcaccgccgccagttcgtggaccatttttaggtcatcctgcgccgccagtccacgaccgacgccaaccacacgt                                                                                                                                       >  2:204762‑M1/1‑71 (MQ=255)                                                                                                                                                                                cAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCtccatccagttctcgccttcggcaattggacgtgaacagccgacttcagcattcagcaccgccgccagttcgtggaccatttttaggtcatcctgcgccgccagtccacgaccgacgccaaccacacgttttg                                                                                                                                   <  1:204768‑M1/200‑134 (MQ=255)                                                                                                                                                                                         tGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGT‑TCACGTCCAATTGCCGAAg                                                                                   >  1:276548/1‑238 (MQ=255)                                                                                                                                                                                                                 aagcgcgaggAAACGGTACCTTATGTGGCGCCGCGTCATGAAATTCTCTGTCGCGAACGCCGGGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGT‑TCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCg                       <  2:278324/265‑1 (MQ=255)                                                                                                                                                                                                                                     ttATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGNGCTGAATGCTGAAGTCGGCTGT‑TCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTgctgtctctca  >  1:278335/1‑265 (MQ=255)                                                                                                                                                                                                                                               ccGCGTCATGAAATTCTCTGTAGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTg                                                                                                                                     >  2:79617/1‑135 (MQ=255)                                                                                                                                                                                                                                                  cgTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGtgctgaatgct                                                                                                                   >  1:51810/1‑150 (MQ=255)                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                       AGCGCTGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGT‑TCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGA  >  CP009273/1774933‑1775435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.