New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3379834 =	17 (0.980)	5 (0.310)	4/286	NT	28.6%	coding (1714/1968 nt)	aaeB	p‑hydroxybenzoic acid efflux system component
	?	CP009273	3380046 =	9 (0.550)					coding (1502/1968 nt)	aaeB	p‑hydroxybenzoic acid efflux system component

GTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTACCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATCACATGGTCTGCTGTGCGGCGCATTTGTCGGTGAAACGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCTGATAAAGTGCCGGGAGGTGGTTCTCTTTACGACGTGCCACATTGGTAGTCATCGCGGAAACAGCGGCAGAAACAAACTGATTAAGCAGTACACGTCCGGTCCTGTCGCGCGATTTATCCC  >  CP009273/3379590‑3380037                                                                                                                                                                                                                                                     |                                                                                                                                                                                                            gTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTACCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATCACATGGTCTGCTGTGCGGCGCATTTGTCGGTGAAACGCCGAAAAATCCTCGTTAAACGGGAACGGTGCATCAAGCAGGCGACGGTGCGCGATAATCATAGTCAGcccccg                                                                                                                                                                               >  1:200548/1‑273 (MQ=255)                             tCCCCGCCAGCCGATTTACCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCCTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATCACATGGTCTGCTGTGCGGCGCATTTGTCGGTGAAACGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGgcgc                                                                                                                                                                                                            >  2:297424/1‑218 (MQ=255)                                 cGCCAGCCGATTTACCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCCTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATCACATGGTCTGCTGTGCGGCGCATTTGTCGGTGAAACGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCTGGt                                                                                                                                                                                                        <  1:297435/218‑1 (MQ=255)                                                                                          ttCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATCACATGGTCTGCTGTGCGGCGCATTTGTCGGTGAACCGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCTGATAAAGTGCCGGGAGGGGGTTCTCTTACAGACGTg                                                                                      >  1:82827/1‑275 (MQ=255)                                                                                              tGGTAGATTTCCAGGTCTGACAGCAACTGGCCGAGGTGCCTACGACGTTTATCTGTGCTACGGGCAGGTATCACATGGGCTGCTGTGCGGCGCTTTTGTCGGTGGAACGCCGATAAATCGTCGTTAACCGGGATGGGTGCATCACGCGGGCCGGGGTGCGCGATAAGCATCGTCAGCGCCAGGCGAAATGTCTGCAAATCCCCTGGGAACTTATGCATCAGCAAAAACAGCCGCTGACAAAGTGCCGGGAGGTGGTTCTCTTAACGACGTg                                                                                      <  2:88507/271‑1 (MQ=255)                                                                                                                                           ggTTTGTCATCGCTACTCGACGATAGCCCATGGTCTGCTGTTCGGCGCATTTGTCGGTGAAACGCCGATAAATCCTCGTTTACCGGGATCGGTGCAGCACTCCGGCGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCTGATAAAGTGCCGGGAGGTGGTTCTCTTTACGACGTGCCACATTGGTAGTCATCGCGGAAACAGCGGCAGAAACAAACTGATTAAg                                     <  2:82825/274‑1 (MQ=255)                                                                                                                                                                      tgactttccatttcagtcagtttctcgacagcgcattagggcaaatcgtcggctgtgtgctcgcgttcaccgttattttGCTGGTgc                                                                                                                                                                                                      <  1:71864‑M1/8‑1 (MQ=255)                                                                                                                                                                      tgactttccatttcagtcagtttctcgacagcgcattagggcaaatcgtcggctgtgtgctcgcgttcaccgttattttGCTGGTGCGGGATAA‑‑ATCG‑C‑GCGACAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCaaaaa                                                                                                                                  <  1:171149‑M1/72‑1 (MQ=255)                                                                                                                                                                      tgactttccatttcagtcagtgtgacgacagcgcattagggcaaatcgtcggctgtgtgctcgcgttcaccgttattttGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCTGATAAAGTGCCGGGAggtg                                                                                                       <  1:230869‑M1/103‑1 (MQ=255)                                                                                                                                                                          tttccatttcagtcagtttctcgacagcgcattagggcaaatcgtcggctgtgtgctcgcgttcaccgttattttGCTGGTGCGGGATAA‑‑ATCG‑C‑GCGACAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAgc                                                                                                                              >  2:171145‑M1/76‑151 (MQ=255)                                                                                                                                                                          tttccatttcagtcagtttctcgacagcgcattagggcaaatcgtcggctgtgtgctcgcgttcaccgttattttGCTGGTGCGCGa                                                                                                                                                                                                  >  2:71862‑M1/76‑87 (MQ=255)                                                                                                                                                                          tttccatttcagtcagtttctcgacagcgcattagggcaaatcgtcggctgtgtgctcgcgttcaccgttattttGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCTGATAAAGTGCCGGGAGGTGGTtc                                                                                                   >  2:230862‑M1/76‑182 (MQ=255)                                                                                                                                                                          tttccatttcagtcagtttctcgacagcgcattagggaaaatcgtcggctgtgtgctcgcgttcaccgttattttGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCGGATAAAGTGCCGGGAGGTGGTTCTCTTTACGACGTGCCACACTGGTAGTCATCGCGGAAACAGCGGCAGAAACAAACTg                                           >  1:90516‑M1/76‑238 (MQ=255)                                                                                                                                                                           gTCTGCTGTGTGGCGCATTTGTCGGTGAAACGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCTGATAAAGTGCCGGGAGGTGGTTCTCTTTACGACGTGCTACATTGGTAGTCATCGCGGAAACAGCGGCAGAAACAAACTGATTAAGCAGTACACGTCCGGTCCTGTCGCGCGATTTAt     >  1:327735/1‑275 (MQ=255)                                                                                                                                                                           gTCTGCTGTGCGGCGCATTTGTCTGTGAAACGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCTGATAAAGTGCCGGGAGGTGGTTCTCTTTACGACGTGCCACATTGGTAGTCATCGCGGAAACAGCgg                                                        >  1:235366/1‑224 (MQ=255)                                                                                                                                                                           gTCTGCTGTGCGGCGCATTTGTCGGTGAAACGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCTGGTGAGCGATAATCATCGTCCGCGCCAGGCGAAATTTCg                                                                                                                                                                    >  2:272873/1‑116 (MQ=255)                                                                                                                                                                              tgctgTGCGGCGCATTTGTCGGTGAAACGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTNCTGATAAAGTGCCGGGAGGTGGTTCTCTTTACGACGTGCCACATTGGTAGTCATCGCGGAAACAGCGGCAGAAACAAACTGATTAAGCAGTACACGTCAGGTCCTGTCGCGCGATTTATccc  >  1:288677/1‑275 (MQ=255)                                                                                                                                                                               gctgTGCGGCGCATTTGTCGGTGAAACGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCTGGTGCGCGATAATCATCGTCAGCTCCAGGCGAAATTTCGGCaa                                                                                                                                                                <  1:272884/116‑1 (MQ=255)                                                                                                                                                                               gctgTGCGGCGCATTTGTCGGTGAAACGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCTGATAAAGTGCCGGGAGGTGGTTCTCTTTACGACGTGCCACATTGGTAGTCATCGCGGAAACAGCGGCAGa                                                    <  2:235359/224‑1 (MQ=255)                                                                                                                                                                                     cggcgCATTTGTCGGTGAAACGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCTGATAAAGTGCCGGGAGGTGGTTCTCTTTACGACGTGc                                                                                     >  1:25246/1‑185 (MQ=255)                                                                                                                                                                                         gcATTTGTCGGTGAAACGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCTGATAAAGTGCCGGGAGGTGGTTCTCTTTACGACGTGCcaca                                                                                 <  2:25246/185‑1 (MQ=255)                                                                                                                                                                                                  ggTGAAACGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCt                                                                                                                                                                                                           >  1:68964/1‑54 (MQ=255)                                                                                                                                                                                                    tGAAACGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAg                                                                                                                                        >  2:336481/1‑119 (MQ=255)                                                                                                                                                                                                      aaaCGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCTGGTg                                                                                                                                                                                                       <  2:68962/54‑1 (MQ=255)                                                                                                                                                                                                        aCGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATCCATCAGCaaa                                                                                                                                    <  1:336493/119‑1 (MQ=255)                                                                                                                                                                                                             gATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCTGGTGCGCGATAGTCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCTGATAAAGTGCCGGGAGGTGGTTCTCTTTACGACGTGCCACATTGGTAGTCATCGCGGAAACAGCGGCAGAAACAAACTGATTAAGCAGTACACGTCCGGTCCTGTcgc              <  1:175271/232‑1 (MQ=255)                                                                                                                                                                                                                                                 aGGCGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGACATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCTGATAAAGTGCCGGGAGGTGGTTCTCTTTACGACGt                                                                                       >  1:111620/1‑123 (MQ=255)                                                                                                                                                                                                                                                 aGGCGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCTGATAAAGTGc                                                                                                                >  2:284446/1‑98 (MQ=255)                                                                                                                                                                                                                                                     GCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCTGATAAAGTGCCggg                                                                                                            >  1:284457‑M1/1‑98 (MQ=255)                                                                                                                                                                                                                                                     GCTGGTGCGCGATAATCAGCGTCAGCGCCAGGCGAAAGTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCTGATAAAGTGCCGGGAGGTGGTTCTCTTTACGACGTGCca                                                                                   >  2:111618‑M1/1‑123 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                            GTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTACCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATCACATGGTCTGCTGTGCGGCGCATTTGTCGGTGAAACGCCGATAAATCCTCGTTAACCGGGATCGGTGCATCACGCAGGCGCTGGTGCGCGATAATCATCGTCAGCGCCAGGCGAAATTTCGGCAAATCCCCTGGGAACTTATTCATCAGCAAAAACAGCTGCTGATAAAGTGCCGGGAGGTGGTTCTCTTTACGACGTGCCACATTGGTAGTCATCGCGGAAACAGCGGCAGAAACAAACTGATTAAGCAGTACACGTCCGGTCCTGTCGCGCGATTTATCCC  >  CP009273/3379590‑3380037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.