New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3801158	24 (1.390)	6 (0.370)	4/288	NT	21.9%	coding (301/1035 nt)	waaQ	lipopolysaccharide core biosynthesis protein
	?	CP009273	= 3801449	20 (1.220)					coding (10/1035 nt)	waaQ	lipopolysaccharide core biosynthesis protein

TGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGTTTTTATCAACGAAAGCACATTTTTAATTTTATCGAAAGTTCCCGCACCTTTATTGCTTATCCCATAGAGCGCATTAATTTCCGGGTTTTCAGACAAAATAGGGATGGTGTCCTGATAAAGCAGCATATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAG  >  CP009273/3800914‑3801427                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                              tGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGAGTGAAGTTTTTTTGCCAAATACAAAGATGCCGATGACCATAAAGTTGTGATATTTTCATTCGTGCAGGTAAACAACgaaatac                                                                                                                                                                                                                                                 >  2:90651/1‑269 (MQ=255)                                         cGCACAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGccacc                                                                                                                                                                                                                                       <  1:64001/245‑1 (MQ=255)                                                ggCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTaa                                                                                                                                                                                                                 >  1:114456/1‑260 (MQ=255)                                                    tCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGAc                                                                                                                                                                                                             <  2:114454/260‑1 (MQ=255)                                                                  cATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGTTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTAcc                                                                                                                                                                                                                                                   <  1:300801/208‑1 (MQ=255)                                                                                              cTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGCCCGATAAATTACGCTCACCAATATGTGTACCGTGCATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACAATGCTGCCGCTGACCATAAAGTTGCGATATTTTCATTCGTGCAGGTAAACAACGCACCAGCAGCTCAACCATCCACTGATCCGTAAGATTAATGACCAGGCCATAATTATTCGCACGCAGAGCTTTGTTCAACGAAAGGGCATGATTAGtttt                                                                                                                                                    >  2:292347/1‑275 (MQ=255)                                                                                                                tAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTTAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGAGATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCAt                                                                                                                                                                                                     <  1:120191/208‑1 (MQ=255)                                                                                                                  gAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATcatggggatatgttattaactactcctgtcatcagtacgc                                                                                                                                                                                                                                       >  1:24341‑M1/1‑132 (MQ=255)                                                                                                                      tCGGTAATAACTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATcatggggatatgttattaactactcctgtcatcagtacgctcaa                                                                                                                                                                                                                                   <  2:24341‑M1/172‑45 (MQ=255)                                                                                                                         gTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGGTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGTTTTTATCAACGAAAGCACATTTTTAATTTTATCGAAAGTTCCCGCACCTTTATTGc                                                                                                                          <  1:333725/274‑1 (MQ=255)                                                                                                                                    tGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACcagc                                                                                                                                                                                                                                                >  1:266100/1‑145 (MQ=255)                                                                                                                                    tGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGTTTTTATCAACGAAAGCACATTTTTAATTTTATCGAAAGTTCCCGCACCTTTATTGCTTATACCATaga                                                                                                              >  1:101835/1‑275 (MQ=255)                                                                                                                                        tCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAgcg                                                                                                                                                                                                                                            <  2:266092/145‑1 (MQ=255)                                                                                                                                                                         gtACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAgg                                                                                                                                                                                                                                                                >  2:34532/1‑92 (MQ=255)                                                                                                                                                                         gtACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACg                                                                                                                                                                                                                                                       >  1:318341/1‑101 (MQ=255)                                                                                                                                                                         gtACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTaa                                                                                                                                                                                                                 >  2:248715/1‑139 (MQ=255)                                                                                                                                                                         gtACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGTTTTTATCAACGAAAGCACATTTTTAATTTTATCGAAAGTTCACGCACCTTTATTGCTTATCCCATAAAGCGCATTAATNTGCGGTTTTTCACACaaaaaattaat                                                                         >  2:223683/1‑268 (MQ=255)                                                                                                                                                                            ccGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATcatggggatatgttattaactactcctgtcatcagtacgct                                                                                                                                                                                                                                      >  2:55857‑M1/1‑74 (MQ=255)                                                                                                                                                                            ccGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATcatggggatatgttattaactactcctgtcatcagtacgct                                                                                                                                                                                                                                      >  1:319393‑M1/1‑74 (MQ=255)                                                                                                                                                                             cGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTaaa                                                                                                                                                                                                                                                            <  1:34532/92‑1 (MQ=255)                                                                                                                                                                             cGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTAcc                                                                                                                                                                                                                                                   <  2:318330/101‑1 (MQ=255)                                                                                                                                                                             cGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGAc                                                                                                                                                                                                             <  1:248723/139‑1 (MQ=255)                                                                                                                                                                              gtgtATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTNCAGGTAAANAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGTTTTTATCAACGAAAGCACATTTTTAATTTTATCGAAAGTTCCCGCACCTTTATTGCTTATCCCATAGAGCGCATTAATTTCCGGGTTTTCAGACAAAATAGGGATGgtgt                                                                    <  1:223689/275‑1 (MQ=255)                                                                                                                                                                                gtATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATcatggggatatgttattaactactcctgtcatcagtacgctcaag                                                                                                                                                                                                                                  <  2:319382‑M1/115‑46 (MQ=255)                                                                                                                                                                                gtATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATcatggggatatgttattaactactcctgtcatcagtacgctcaag                                                                                                                                                                                                                                  <  1:55859‑M1/115‑46 (MQ=255)                                                                                                                                                                                                                         tgctgcCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACcagc                                                                                                                                                                                                                                                >  2:154296/1‑60 (MQ=255)                                                                                                                                                                                                                             gcCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAgcg                                                                                                                                                                                                                                            <  1:154300/60‑1 (MQ=255)                                                                                                                                                                                                                                 aTGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGTTTTTATCAACGAAAGCACATTTTTAATTTTATCGACAg                                                                                                                                            >  1:44203/1‑152 (MQ=255)                                                                                                                                                                                                                                     ccATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGTTTTTATCAACGAAAGCACATTTTTAATTTTATCGAAAGTTcc                                                                                                                                        <  2:44202/152‑1 (MQ=255)                                                                                                                                                                                                                                              tGCGATATcatggggatatgttattaactactcctgtcatcagtacgctcaagcagaattatcctgatgcaaaaatcgatatgctgctttatcaggacaccatccctattttgtctgaaaacccggaaattaatgcgctctatgggataagcaataaaggtgcgggaactttcgataaaattaaaaatgtgctttcgttgataaaaactctgcgtgcgaataattatgacctggtcattaatcttacggatcagtggatggtggcgctgctggta    >  1:90653‑M1/1‑8 (MQ=255)                                                                                                                                                                                                                                              tGCGATATcatggggatatgttattaactactcctgtcatcagtacgctcaagcagaattatcctgatgcaaaaatcgatatgctgctttatcaggacaccatccctattttgtctgaaaacccggaaattaatgcgctctatgggataagcaataaaggtgcgggaacttt                                                                                                           >  2:84958‑M1/1‑8 (MQ=255)                                                                                                                                                                                                                                                cGAGATGTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGTTTTTATCAACGAAAGCACATTTTTAATTTGATCGAAAGTTCCCGCACCTTTATTGCTTATCCCATAGAGCGCATTAATTTCCGGGTTTTCAGACAAAATAGGGATGGTGTCCTGATAAAGCAGCATATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGag  <  1:292358/275‑1 (MQ=255)                                                                                                                                                                                                                                                  atatcatggggatatgttattaactactcctgtcatcagtacgctcaagcagaattatcctgatgcaaaaatcgatatgctgctttatcaggacaccatccctattttgtctgaaaacccggaaattaatgcgctctatgggataagcaataaaggtgcgggaactttcgat                                                                                                       <  1:84960‑M1/172‑169 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                              TGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGTTTTTATCAACGAAAGCACATTTTTAATTTTATCGAAAGTTCCCGCACCTTTATTGCTTATCCCATAGAGCGCATTAATTTCCGGGTTTTCAGACAAAATAGGGATGGTGTCCTGATAAAGCAGCATATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAG  >  CP009273/3800914‑3801427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.