New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1846333 =	7 (0.400)	4 (0.250)	4/286	NT	33.9%	coding (190/642 nt)	pncA	nicotinamidase/pyrazinamidase
	?	CP009273	1846630 =	9 (0.550)					coding (487/642 nt)	pncA	nicotinamidase/pyrazinamidase

ATCACTGTGTGCAGAACAGTGAAGGCGCACAATTACATCCGTTACTGCACCAAAAAGCGATCGCAGCGGTGTTCCATAAAGGCGAAAATCCTTTAGTTGACAGTTACAGTGCCTTTTTTGATAACGGCCGTCGGCAGAAAACCTCTCTCGATGACTGGTTACGCGATCATGAAATCGATGAATTGATCGTTATGGGCCTGGCTACTGACTATTGCGTGAAGTTTACCGTGCTGGACGCGTTACAGTTAGGTTATAAGGTAAACGTGATTACCGATGGTTGTCGTGGCGTGAATATCCAGCCCCAGGACAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGAT  >  CP009273/1846397‑1846861                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                        aTCACTGTGTGCAGAACAGTGAAGGCGCACAATTACATCCGTTACTGCACCAAAAAGCGATCGCAGCGGTGTTCCATAAAGGCGAAAATCCTGTAGTTGACAGTTACAGTGCCTTTTTTGATAACGGCCGTCGGCAGAAAACCGCTCTCGATGACTGGTTACGCGATCATGAAATCGATGAATAGATCTTTATGATCCTGCATACTGACTATTGCGTTAGGTTTACCGTGCTGGATGCGTTACAGGTAGGTTATAAGGAAAACGTTATGACCGac                                                                                                                                                                                                >  1:169060/1‑274 (MQ=255)                                                                         tCCATAATGTCGAAATTTCTTTAGTTGACAGTTACAGTGCCTTTTTTGATAACGGCCGTCGGCAGAAAACCTCTCTCGATGACGGGTTACGCGATCATGAAATCGATGAATTGATCGTTATGGGCCTGGCTACTGACTATTGCGTGAAGTTTACCGTGCTGGACGCGTTACAGTTAGGTTATAAGGTAAACGTGATTACCGATGGTTGTCGTGGCGTGAATATCCAGCCCCAGGACAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTgggg                                                                                                                          <  1:96541/273‑1 (MQ=255)                                                                                                                                   tCGGCAGAAAACCTCTCTCGATGACTGGTTACGCGATCATGAAATCGATGAATTGATCGTTATGGGCCTGGCTACTGACTATTGCGTGAAGTTTACCGTGCTGGACGCGTTACAGTTAGGTTATAAGGTAAACGTGATTACCGATGGTTGTCGTGGCGTGAATATCCAGCCCCAGGACAGTGCGCACGCGTTTATGGAGATGTCATCAGCTGGGGc                                                                                                                         >  2:47656/1‑216 (MQ=255)                                                                                                                                       cAGAAAACCTCTCTCGATGACTGGTTACGCGATCATGAAATCGATGAATTGATCGTTATGGGCCTGGCTACTGACTATTGCGTGAAGTTTACCGTGCTGGACGCGTTACAGTTAGGTTATAAGGTAAACGTGATTACCGATGGTTGTCGTGGCGTGAATATCCAGCCCCAGGACAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACg                                                                                                                     <  1:47657/216‑1 (MQ=255)                                                                                                                                                             tgcacacagtgatctggccagaaggtttgtggcaaaccgtcgagttggcctggcgtataaggctctacaccgtgctgGACGCGTTACAGTTAGGTTATAAGGTAAACGTGATTACCGATGGTTGTCGTGGCGTGAATATCCAGCCCCAGGACAGTGCGCACGCGTTTATgg                                                                                                                                            >  1:95142‑M2/78‑171 (MQ=255)                                                                                                                                                                 cacagtgatctggccagaaggtttgtggcaaaccgtcgagttggcctggcgtataaggctctacaccgtgctgGACGCGTTACAGTTAGGTTATAAGGTAAACGTGATTACCGATGGTTGTCGTGGCGTGAATATCCAGCCCCAGGACAGTGCGCACGCGTTTATGGAGAt                                                                                                                                        <  2:95140‑M2/98‑1 (MQ=255)                                                                                                                                                                    agtgatctggccagaaggtttgtggcaaaccgtcgagttggcctggcgtataaggctctacaccgtgctgGACGCGTTACAGTTAGGTTATAAGGTAAACGTGATTACCGATGGTTGTCGTg                                                                                                                                                                                      >  2:90758‑M2/71‑122 (MQ=255)                                                                                                                                                                        atctggccagaaggtttgtggcaaaccgtcgagttggcctggcgtataaggctctacaccgtgctgGACGCGTTACAGTTAGGTTATAAGGTAAACGTGATTACCGATGGTTGTCGTGGCGt                                                                                                                                                                                  <  1:90760‑M2/56‑1 (MQ=255)                                                                                                                                                                                               tATGGGCCTGGCTACTGACTATTGCGTGAAGTTTACCGTGCTGGACGCGTTACAGTTAGGTTATAAGGTAAACGTGATTACCGATGGTTGTCGTGGCGTGAATATCCAGCCCCAGGACAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGANGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTAAGTGGCACATCTGGCAATTGAt  >  1:241642/1‑275 (MQ=255)                                                                                                                                                                                                     ccTGGCTACTGACTATGGCGTGAAGTTTGCCGTGCTGGACGCGTGACAGTTAGGTTATAAGGTAAACGTGATTACCGATGGTTGTCGTGGCGTGAATATCCAGCCCCAGGACAGTgcg                                                                                                                                                         >  1:248872/1‑118 (MQ=255)                                                                                                                                                                                                         gCTACTGACTATTGCGTGAAGTTTACCGTGCTGGACGCGTTACAGTTAGGTTATAAGGTAAACGTGATTACCGATGGTTGTCGTGGCGTGAATATCCAGCCCCAGGACAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAagag                                                                                          >  2:216187/1‑177 (MQ=255)                                                                                                                                                                                                         gCTACCGACTATTGCGTGAAGTTTACCGTGCTGGACGCGTTACAGTTAGGTTATAAGGTAAACGTGATTGCCGATGGTTGTCGTTGCGTGAATATCCAGCCCCAGGACAGTGCGCAcg                                                                                                                                                     <  2:248864/118‑1 (MQ=255)                                                                                                                                                                                                             cTGACTATTGCGTGAAGTTTACCGTGCTGGACGCGTTACAGTTAGGTTATAAGGTAAACGTGATTACCGATGGTTGTCGTGGCGTGAATATCCAGCCCCAGGACAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGacac                                                                                      <  1:216193/177‑1 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                        ATCACTGTGTGCAGAACAGTGAAGGCGCACAATTACATCCGTTACTGCACCAAAAAGCGATCGCAGCGGTGTTCCATAAAGGCGAAAATCCTTTAGTTGACAGTTACAGTGCCTTTTTTGATAACGGCCGTCGGCAGAAAACCTCTCTCGATGACTGGTTACGCGATCATGAAATCGATGAATTGATCGTTATGGGCCTGGCTACTGACTATTGCGTGAAGTTTACCGTGCTGGACGCGTTACAGTTAGGTTATAAGGTAAACGTGATTACCGATGGTTGTCGTGGCGTGAATATCCAGCCCCAGGACAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGAT  >  CP009273/1846397‑1846861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.