New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2491587	23 (1.330)	3 (0.190)	3/282	NT	14.5%	coding (188/1239 nt)	alaC	valine‑pyruvate aminotransferase 3
	?	CP009273	= 2491794	14 (0.870)					intergenic (‑20/‑356)	alaC/ypdA	valine‑pyruvate aminotransferase 3/sensor kinase regulating yhjX; pyruvate‑responsive YpdAB two‑component system

CGGGAAATGGCGCGACGTAACCGCGGAATGCCGCGTGAAGTGGAGTAACCATGCGTGTCCGGGCGCTGGGCCACAGTACATAATTTTTCGACGATATGCGGCGGAGTCGCACCGTCCGGGTTACCCATGCTGAAATCGATAATATCTTCGCCGCGCCGACGCGCAGCCATTTTCAGTTCAGCGGTGATGTTAAAAACGTAGGGCGGGAGACGATCAATGCGCGTAAAGCGACGTTCAGGGCGAGTGTCAGCCATAATTTCCTCAGATTAACGTTAGCGCCCGGACCGTCCGAGCGACGCTGCCACGATGGTGGCTGTTTTGAAAATAGCCTGATTAATTTCTGTCTGTCCAGCGTTTTAGAACATTTTATTAATGACGTTAAATGAGGAACTCTGCTTTAAAAACAGGAAATTTATCTGCGCTAACAAGAAAATTACCACTCATTTTATTAACATAATAATTTC  >  CP009273/2491521‑2491984                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                               cccgctctGGCGCGACGTACCCGCGGAAGGCCTAGTGAAGTGCACTAACCTTTCTTGTCCGGGCGCTGGGCCACAGTCCCTAATTTTTCGACGATATGCGGCGGAGTCGCACCGTCCGGGTTACCCATGCTGAAATCGATAATATCTTCGCCGCGCCGACGCGCAGCCATTTTCAGTTCAGCGGTGATGTTAAAAACGTAGGGCGGGAGACGATCAATGCGCGTAAAGCGACGTTCAGGGCGAGTGTCAGCCATAATTTCCTCAGATTAACGtt                                                                                                                                                                                                <  2:53537/267‑1 (MQ=255)                                agagagAAGGGGAGTCAACCGGCGTGTCCGGGCGCTGGCCCACGTCTCAATGATTTTCGACGATGCGCGGCGGAGTCGCACCGTCCGGGTCACCCATGCTGAGATCGATAATGCCTTCGCCGCGCCGACGCGCGTCCATTTTCCGCTCACCGGTGATGTTAAAAACGCAGGGCGGGAGACGATCAATGCGCGTAAAGCGACGTTCAGGGCGAGTGTCAGCCATAATTTCCTCAGATTAACGTTAGCGCCCGGACCGTCCGAGCGACGCTGCCACg                                                                                                                                                                <  2:271937/270‑1 (MQ=255)                                                                               cATAATTTTTCGACGATATGCGGCGGAGTCGCACCGTCCGGGTTACCCATGCTGAAATCGATAATATCTTCGCCGCGCCGACGCGCAGCCATTTTCAGTTCAGCGGTGATGTTAAAAACGTAGGGCGGGAGACGATCAATGCGCGTAAAGCGACGTTCAGGGCGAGTGTCAGCCATAATTTCCTCAGATTAACGTTagcgcccggacacgcatggttactccacttcacgcggcattccgcggttacgtcgcgccatttcccgctggtatcagga                                                                                                                 <  1:193478‑M2/275‑80 (MQ=255)                                                                                    tttttCGACGATATGCGGCGGAGTCGCACCGTCCGGGTTACCCATGCTGAAATCGATAATATCTTCGCCGCGCCGACGCGCAGCCATTTTCAGTTCAGCGGTGATGTTAAAAACGTAGGGCGGGAGACCATCAATGCGCGTAAAGCGACGTTCAGGGCGAGTGTCAGCCATAATTTCCTCAGATTAACGTTAGCGCCCGGACCGTCCGAGCGACg                                                                                                                                                                        >  1:152895/1‑215 (MQ=255)                                                                                       ttCGACGATATGCGGCGGAGTCGCACCGTCCGGGTTACCCATGCTGAAATCGATAATATCTTCGCCGCGCCGACGCGCAGCCATTTTCAGTTCAGCGTTGATGTTAAAAACGTAGGGCGGGAGACGATCAATGCGCGTAAAGCGACGTTCAGGGCGAGTGTCAGCCATAATTTCCTCAGATTAACGTTAGCGCCCGGACCGTCCGAGCGACGCTGCCACGATGGTGGCTGTTTTGAAAATAGCCTGATTAAttt                                                                                                                              >  1:181080/1‑254 (MQ=255)                                                                                        tCGACGATATGCGGCGGAGTCGCACCGTCCGGGTTACCCATGCTGAAATCGATAATATCTTCGCCGCGCCGACGCGCAGCCATTTTCAGTTCAGCGGTGATGTTAAAAACGTAGGGCGGGAGACCATCAATGCGCGTAAAGCGACGTTCAGGGCGAGTGTCAGCCATAATTTCCTCAGATTAACGTTAGCGCCCGGACCGTCCGAGCGACGCTGc                                                                                                                                                                    <  2:152891/215‑1 (MQ=255)                                                                                                                                  cTGAAATCGATAATATCTTCGCCGCGCCGACGCGCAGCCATTTTCAGTTCAGCGGTGATGTTAAAAACGTAGGGCGGGAGACGATCAATGCGCGTAAAGCGACGTTCAGGGCGAGTGTCAGCCATAATTTCCTCAGATTAACGTTAGCGCCCGGACCGTCCGAGCGACGCTGCCACGATGGTGGCTGTTTTGAAAATAGCCTGATTAATTTCTGTCTGTCCAGCGTTTTAg                                                                                                          >  2:127793/1‑231 (MQ=255)                                                                                                                                      aaTCGATAATATCTTCGCCGCGCCGACGCGCAGCCATTTTCAGTTCAGCGGTGATGTTAAAAACGTAGGGCGGGAGACGATCAATGCGCGTAAAGCGACGTTCAGGGCGAGTGTCAGCCATAATTTCCTCAGATTAACGTTAGCGCCCGGACCGTCCGAGCGACGCTGCCACGATGGTGGCTGTTTTGAAAATAGCCTGATTAATTTCTGTCTGTCCAGCGTTTTAGAACa                                                                                                      <  1:127795/231‑1 (MQ=255)                                                                                                                                                                               agttcagCGGTGATGTTAAAAACGTAGGGCGGAAGACGATCAATGCGCGTAAAGCGACGTTCAGGGCGAGTGTCAGCCATAATTTCCTCAGATTAACGTTAGCGCCCGGACCGTCCGAGc                                                                                                                                                                            >  2:70396/1‑120 (MQ=255)                                                                                                                                                                                   cagCGGTGATGTTAAAAACGTAGGGCGGAAGACGATCAATGCGCGTAAAGCGACGTTCAGGGCGAGTGTCAGCCATAATTTCCTCAGATTAACGTTAGCGCCCGGACCGTCCGAGCGACg                                                                                                                                                                        <  1:70398/120‑1 (MQ=255)                                                                                                                                                                                                aaaaaCGTAGGGCGGGAGACGATCAATGCGCGTAAAGCGACGTTCAGGGCGAGTGTCAGCCATAATTTCCTCAGATTAACGTTagcgcccggacacgcatggttactccacttcacgcg                                                                                                                                                            <  1:41845‑M2/119‑37 (MQ=255)                                                                                                                                                                                                    aCGTAGGGCGGGAGACGATCAATGCGCGTAAAGCGACGTTCAGGGCGAGTGTCAGCCATAATTTCCTCAGATTAACGTTagcgcccggacacgcatggttactccacttcacgcggcat                                                                                                                                                        >  2:41844‑M2/1‑79 (MQ=255)                                                                                                                                                                                                                              cgTAAAGCGACGTTCAGGGCGAGTGTCAGCCATAATTTCCTCAGATTAACGTTAGCGCCCGGACCGTCCGAGCGACGCTGCCACGATGGTGGCTGTTTTGAAAATAGCCTGATTAATTTctgtctgt                                                                                                                      >  1:30231/1‑127 (MQ=255)                                                                                                                                                                                                                                  aaGCGACGTTCAGGGCGAGTGTCAGCCATAATTTCCTCAGATTAACGTTAGCGCCCGGACCGTCCGAGCGACGCTGCCACGATGGTGGCTGTTTTGAAAATAGCCTGATTAATTTCTGTCTGTCCAg                                                                                                                  <  2:30231/127‑1 (MQ=255)                                                                                                                                                                                                                                                         aGCCATAATTTCCTCAGATTAACGTTAGCGCCCGGACCGTCCGAGCGACGCTGCCACGATGGTGGCTGTTTTGAAAATAGCCTGATTAATTTCTGTCTGTCCAGCGTTTTAGAACATTTTATTAATGACGTTAAATGAGGAACTCTGCTTTAAAAACAGGAAATTTATCTGCGCTAACAAGAAAATTACCACTCATTTTATTAACAtaataa      >  2:208239/1‑212 (MQ=255)                                                                                                                                                                                                                                                             aTAATTTCCTCAGATTAACGTTAGCGCCCGGACCGTCCGAGCGACGCTGCCACGATGGTGGCTGTTTTGAAAATAGCCTGATTAATTTCTGTCTGTCCAGCGTTTTAGAACATTTTATTAATGACGTTAAATGAGGAACTCTGCTTTAAAAACAGGAAATTTATCTGCGCTAACAAGAAAATTACCACTCATTTTATTAACATAATAATTTc  <  1:208245/212‑1 (MQ=255)                                                                                                                                                                                                                                                                          aTTAACGTTAGCGCCCGGACCGTCCGAGCGACGCt                                                                                                                                                                      >  2:287166/1‑35 (MQ=255)                                                                                                                                                                                                                                                                            tAACGTTAGCGCCCGGACCGTCCGAGCGACGCTGCCACGATGGTGGCt                                                                                                                                                       >  2:288012/1‑48 (MQ=255)                                                                                                                                                                                                                                                                              aCGTTAGCGCCCGGACCGTCCGAGCGACGCTGCCa                                                                                                                                                                  <  1:287177/35‑1 (MQ=255)                                                                                                                                                                                                                                                                                gTTAGCGCCCGGACCGTCCGAGCGACGCTGCCACGATGGTGGCTGttt                                                                                                                                                   <  1:288023/48‑1 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                               CGGGAAATGGCGCGACGTAACCGCGGAATGCCGCGTGAAGTGGAGTAACCATGCGTGTCCGGGCGCTGGGCCACAGTACATAATTTTTCGACGATATGCGGCGGAGTCGCACCGTCCGGGTTACCCATGCTGAAATCGATAATATCTTCGCCGCGCCGACGCGCAGCCATTTTCAGTTCAGCGGTGATGTTAAAAACGTAGGGCGGGAGACGATCAATGCGCGTAAAGCGACGTTCAGGGCGAGTGTCAGCCATAATTTCCTCAGATTAACGTTAGCGCCCGGACCGTCCGAGCGACGCTGCCACGATGGTGGCTGTTTTGAAAATAGCCTGATTAATTTCTGTCTGTCCAGCGTTTTAGAACATTTTATTAATGACGTTAAATGAGGAACTCTGCTTTAAAAACAGGAAATTTATCTGCGCTAACAAGAAAATTACCACTCATTTTATTAACATAATAATTTC  >  CP009273/2491521‑2491984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.