New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2772394 =	16 (0.920)	3 (0.180)	3/286	NT	15.0%	coding (3692/4581 nt)	ypjA	adhesin‑like autotransporter
	?	CP009273	2772993 =	19 (1.170)					coding (3093/4581 nt)	ypjA	adhesin‑like autotransporter

ACGTTGGTATGCAGGTAGAAATTACCGCTACCGGAAAGTTCATTGGTTGTCAGCGTATTGTAGATACCGTTAGTTGTGGCAGGCGCTGCTGTTTGTGCTGACAAATAAACATCACCGTCGTTGAGTAGCAAACTGTTTACTCTATATTCGCAGTTGCTGGTACCTGCACAGGAATTATTGCTGTTAAGCCAGACACTGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCAGAGCCTGAAACTCATCTTTTGACCGCCCAAGGGTATATTGCCC  >  CP009273/2772778‑2773250                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                  aCGTTGGTATTCATGTAGAAATTACCGCTACCGGAAAGTTCATTGGTTGTCAGCGTAGTGTAGATACCGTTAGTTGTGGCAGGCGCTGCTGTTTGTGCTGACAAATAAACATCACCGTCGTTGAGTAGCAAACTGTTTACTCTATATTCGCAGTTGCTGGTACCTGCACAGGAATTATTGCTGTTAAGCCAGACACTGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAAt                                                                                                                                                                                                        <  1:196247/275‑1 (MQ=255)              ggTAGAAATTACCGCTACCGGAAAGTTCATTGGTTGTCAGCGTATTGTAGATACCGTTAGTTGTGGCAGGCGCTGCTGTTTGTGCTGACAAATAAACATCACCGTCGTTGAGTAGCAAACTGTTTACTCTATATTCGCAGTTGCTGGTACCTGCACAGGAATTATTGCGGTTAAGCCAGACACTGCCCCGGCTGGAAGCAGTCATGTCGGCAAGCGGGGTATCGAAGCCCATTGCCAGAGTCCATGTCCCCCTACCGGCAATCCgaccaccctc                                                                                                                                                                                            >  2:38760/1‑265 (MQ=255)                      gtcctgaaaagtgacggcaacagcaactggaacctgaccaatgatgtcaaacccaacccggaccccatcccaaatccaaagccagacccaaaacccgatccaaagccagacccaaatccaaaaccagaccctactcccgatccaactccgacgcccgttccggagaaacgcattacgccttctacggccgccgtCAGGTCGGCAAGCGTGGTATCCACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGCCCGCCCCTTCCAGttt                                                                                                                                                                                   >  1:294702‑M2/195‑275 (MQ=255)                               acggtatattCATGTGTTGGCAGGTTGTTGTGGAGACGTTTTGTTGGGGGTGGCGCGGCTGTTTGTGCTAACAAAGAAGCATCGCCCGCGTGGAGTGGAAATCTGTTTACTCTAAATGCGCAGTTGCTGGTACCTGCACAGGAATTATGGCTGTTTAGCCAGACACTGCCCCGGCTGGCAGGCGTCAGGTCGGCAAGCGTGGTATCGACTCCAGTTCCCAGAGTGAATGTCGCGCTATCGGTAATCCGGACCAGCCCTTCGAGTTTAACTGGCg                                                                                                                                                                           <  2:320332/266‑1 (MQ=255)                                                 gTCAGCGTATTGTAGATACCGTTAGTTGTGGCAGGCGCTGCTGTTTGTGCTGACAAATAAACATCACCGTCGTTGCGTAGCAAACTGTTTACTCTATATTCGCAGTTGCTGGTACCTGCACAGGAATTATTGCTGTTAAGCCAGACGCTGCCCCGGCTNGCCGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTACCCCGTGGca                                                                                                                                                         >  1:304248/1‑273 (MQ=255)                                                        tATTGTAGATACCGTTAGTTGTGGCAGGCGCTGCTGTTTGTGCTGACAAATAAACATCACCGTCGTTGAGTAGCAAACTGTTTACTCTATATTCGCAGTTGCTGGTACCTGCACAGGAATTATTGCTGTTAAGCCAGACACTGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGAGTAACATTATCCCGTGGCGGCATTaa                                                                                                                                                  >  1:67778/1‑274 (MQ=255)                                                                   ccGTTAGTTGTAGCAGGCGCTGCTGTTTGTGCTGACAAATAAACATCACCGTCGTTGAGTAGCAAAGTGTTTACTCTATATTCGCAGTTGCTGGTACCTGCACAGGAATTATTGCTGTTAAGCCAGACACTGCGCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTAACGACGCCATTTCCCAGAGTCAATGTCGCGATCTCGGTAATCCGAAACGcc                                                                                                                                                                                              >  2:70028/1‑219 (MQ=255)                                                                       tAGTTGTGGCAGGCGCTGCTGTTTGTGCTGACAAATAAACATCACCGTCGTTGAGTAGCAAACTGTTTACTCTATATTCTCAGTTGCTGGTACCTGCACAGGAATTATTGCTGTTAAGCCAGACACTGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTa                                                                                                                                                                                                                                                 >  1:130358/1‑164 (MQ=255)                                                                       tAGTTGTGGCAGGCGCTGCTGTTTGTGCTGACAAATAAACATCACCGTCGTTGAGTAGCAAACTGTTTACTCTATATTCGCAGTTGCTGGTACCTGCACAGGAATTATTGCTGTTAAGCCAGACACTGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCtt                                                                                                                                                                                          <  1:70030/219‑1 (MQ=255)                                                                           tgtgGCAGGCGCTGCTGTTTGTGCTGACAAATAAACATCACCGTCGTTGAGTAGCAAACTGTTTACTCTATATTCGCAGTTGCTGGTACCTGCACAGGAATTATTGCTGTTAAGCCAGACACTGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGa                                                                                                                                                                                                                                             <  2:130356/164‑1 (MQ=255)                                                                               gCAGGCGCTGCTTTTTTTGCTGACAAATAAACATCACCGTCGTTGAGTAGCAAACTGTTTACTCTATATTCGCAGTTGCTGGNACCTGCACNGGAATTATTGCTCTTAAGCCAGACACTGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTGTAACTGGCGTAACATTATCCCGTTGCGTCATGAACGACAGGCTTCCTGTCGCGCCACt                                                                                                                          <  1:224824/275‑1 (MQ=255)                                                                                                   tGAAAAATAACATTCGCCGTTTTTTAGTAGCAACCTGTTGATTCTATATTTGAGTTTGCTGGTCCGTGAACAGGAATGATTGCTGTTAAGCCAGACACTGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGGGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAg                                                                                                        <  2:304237/273‑1 (MQ=255)                                                                                                                     cgatccaaagccagacccaaatccaaaaccagaccctactcccgatccaacgccgacacccgttccggagaaacgcattacgccttctacggcagccgtCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGc                                                                                                                                                                                               >  1:217896‑M2/100‑168 (MQ=255)                                                                                                                         ccaaagccagacccaaatccaaaaccagaccctactcccgatccaacgccgacacccgttccggagaaacgcattacgccttctacggcagccgtCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCt                                                                                                                                                                                           <  2:217890‑M2/73‑1 (MQ=255)                                                                                                                                   aaCTGTTTACTCTATATTCGCAGTTGCTGGTACCTGCACAGGAATTATTGCTGTTAAGCCAGACACTGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACt                                                                                                                                                                               >  2:194665/1‑170 (MQ=255)                                                                                                                                       gTTTACTCTATATTCGCAGTTGCTGGTACCTGCACAGGAATTATTGCTGTTAAGCCAGACACTGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCg                                                                                                                                                                           <  1:194669/170‑1 (MQ=255)                                                                                                                                                           tGCTGGTACCTGCACAGGAATTATTGCGGTTAAGCCAGACACTGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGt                                                                                                                                                                                     >  1:196326/1‑140 (MQ=255)                                                                                                                                                               gttACCTTCACAGGAATTATTGCTGTTAAGCCAGACACTGCCCCTGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTaa                                                                                                                                                                                 <  2:196322/138‑1 (MQ=255)                                                                                                                                                               ggTACCTGCACAGGAATTATTGCTNTTAAGCCAGACACTGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGACTCCTCTCGCGCCACTGACCGATGCATcc                                                                                                             <  1:232271/208‑1 (MQ=255)                                                                                                                                                                                 attGCTGTTAAGCCAGACACTGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGAGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGATCCTCTGCCCGGGCCAGAGCCTACAACACCTCCTTTg                        >  1:325544/1‑275 (MQ=255)                                                                                                                                                                                                       ccccGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGc                                                                                                       >  1:16351/1‑174 (MQ=255)                                                                                                                                                                                                       ccccGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGNAGACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCAGAGCCTGAAACTCATCTTTTGACCGCCCAAGGGGATATTGccc  >  1:263853/1‑275 (MQ=255)                                                                                                                                                                                                           ggCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTAc                                                                                                   <  2:16351/174‑1 (MQ=255)                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                  ACGTTGGTATGCAGGTAGAAATTACCGCTACCGGAAAGTTCATTGGTTGTCAGCGTATTGTAGATACCGTTAGTTGTGGCAGGCGCTGCTGTTTGTGCTGACAAATAAACATCACCGTCGTTGAGTAGCAAACTGTTTACTCTATATTCGCAGTTGCTGGTACCTGCACAGGAATTATTGCTGTTAAGCCAGACACTGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCAGAGCCTGAAACTCATCTTTTGACCGCCCAAGGGTATATTGCCC  >  CP009273/2772778‑2773250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.