New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3824404	12 (0.690)	6 (0.370)	3/282	NT	24.9%	coding (588/1710 nt)	yicH	putative inner membrane‑anchored periplasmic AsmA family protein
	?	CP009273	= 3824452	25 (1.560)					coding (636/1710 nt)	yicH	putative inner membrane‑anchored periplasmic AsmA family protein

TGGTCACCAAAAGCCGGTAAAGTGCTGGGTACGAAGGCGCAGATTCAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTGCAGATTGGTCGCCTGGAAGTGATCGATGCTCGTTTGCAAGGTCCGGACTGGGCGGTGACCGACCTCGATCTCAGCTTGCGCAACATGACCTTCAGTAAAGATGACTGGCAGACACAGGAAGGCAAACTGTCGATGAACGCTAGCGAG  >  CP009273/3824270‑3824716                                                                                                                                                                                       |                                                                                                                                                                                                                                                                         tGGTCACCAAAAGCCGGTAAAGTGCTGGGTACGAAGGCGCAGATTCAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTg                                                                                                                                                                                                                                   >  1:161331/1‑222 (MQ=255)     cACCAAAAGCCGGTAAAGTGCTGGGTACGAAGGCGCAGATTCAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCa                                                                                                                                                                                                                               <  2:161327/222‑1 (MQ=255)                                                      tGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTGCAGATTGGTCGCCTGGAAGTGATCGAt                                                                                                                          >  1:200310/1‑274 (MQ=255)                                                                      cTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGActtctt                                                                                                                                                                                 >  2:127509/1‑203 (MQ=255)                                                                          atgatgTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTgcg                                                                                                                                                                             <  1:127511/203‑1 (MQ=255)                                                                                 tCCTGCCACCAATGTACTGATTGAAGGCTGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACNGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTGCAGATTGGTCGCCTGGAAGTGATCGATGCTCGt                                                                                                                    >  1:242040/1‑253 (MQ=255)                                                                                 tCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTGCAGATTGGTCGCCTGGACGTGATCGATGCTCGTTTGCAAGGTCCGGAcctgcctc                                                                                              >  1:175369/1‑268 (MQ=255)                                                                                     gCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTGCAGATTGGTCGCCTGGAAGTGATCGATGCTCGTTTGCAAGGTCCGGACTGGGCGGTgac                                                                                          >  1:114830/1‑275 (MQ=255)                                                                                                                         gATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTa                                                                                                                                                                       >  2:232310/1‑162 (MQ=255)                                                                                                                             gcgTTACGCTGCCTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTGCAGATTgg                                                                                                                                             <  1:65940/184‑1 (MQ=255)                                                                                                                             gcgTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTACCCGACTTCTTTGCGCCATTACGct                                                                                                                                                                   <  1:232317/162‑1 (MQ=255)                                                                                                                              cgTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCTATTACGCTATGTCCCGTCGTTGCAGATTGGTCGCCTGGAAGTCATCGATGCTCGTTTGCAAGGTACGGACTTGGCGGTGACCGACCTCGATCGCAGTTTGCGCAACATGACCTTCAGTaaa                                                  >  1:314076/1‑274 (MQ=255)                                                                                                                                             ccTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACg                                                                                                                                                                                                                                                          >  2:310341/1‑59 (MQ=255)                                                                                                                                                 ggTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAg                                                                                                                                                                                                                                                      <  1:310352/59‑1 (MQ=255)                                                                                                                                                  gTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcagcgtaacgcgatcgttatcaatactgccttcaatcagtacattggtggcaggaacatcattgagcgaaagcgatccg                                                                                                                                                                                           <  1:318817‑M2/117‑80 (MQ=255)                                                                                                                                                  gTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcagcgtaacgcgatcgttatcaatactgccttcaatcagtacattggtggcaggaacatcattgagcgaaagcgatccg                                                                                                                                                                                           <  2:115339‑M2/117‑80 (MQ=255)                                                                                                                                                  gTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATgg                                                                                                                                                                                                                            >  1:29738/1‑84 (MQ=255)                                                                                                                                                      cGACATCGCCCGCGGGACATTAACCGGAAACGCGcagcgtaacgcgatcgttatcaatactgccttcaatcagtacattggtggcaggaacatcattgagcgaaagcgatccggcac                                                                                                                                                                                       >  2:318806‑M2/1‑34 (MQ=255)                                                                                                                                                      cGACATCGCCCGCGGGACATTAACCGGAAACGCGcagcgtaacgcgatcgttatcaatactgccttcaatcagtacattggtggcaggaacatcattgagcgaaagcgatccggcac                                                                                                                                                                                       >  1:115341‑M2/1‑34 (MQ=255)                                                                                                                                                      cGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGa                                                                                                                                                                                                                        <  2:29738/84‑1 (MQ=255)                                                                                                                                                      cGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGAc                                                                                                                                                                                      >  2:204751/1‑118 (MQ=255)                                                                                                                                                      cGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTa                                                                                                                                                                       >  2:35362/1‑133 (MQ=255)                                                                                                                                                       gACATCGCCCGGGGGACATTAACCGGAAACGCGTAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCGGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGNCGTCTTTGCGTCATTACGCTCTGTCCCGTCGTTGCAGATTGGTCGCCTGGAAGTGATCGATGCTCGTTTGCAAGGTCCGGACTGGGCGGTGACCGACCTCGATCTCAGCTTGCGCAACATGACCTTCAGTAAAGATGACTGGCAGACACAGGAAGGCa                         <  1:304401/274‑1 (MQ=255)                                                                                                                                                          aTCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGActtct                                                                                                                                                                                  <  1:204757/118‑1 (MQ=255)                                                                                                                                                          aTCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGct                                                                                                                                                                   <  1:35362/133‑1 (MQ=255)                                                                                                                                                           tCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTgcg                                                                                                                                                                                                                                 >  1:87636/1‑70 (MQ=255)                                                                                                                                                               ccGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATg                                                                                                                                                                                                                             <  2:87634/70‑1 (MQ=255)                                                                                                                                                                  cgGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTGCCGATTGGCCGCCTGGAAGTGCTCTATGCGCGTTTGCAAGGTCCGGCCCGGGCGTGGTCCCACCTCGATCTCAGCTTGCGCAACATGACCTTGAGAAAAGATGACTGGCAGACACAGGAAGGCAAANAGTCGaccc             >  2:128788/1‑272 (MQ=255)                                                                                                                                                                  cgGGACATTAACCGGAAACGCGCAGCGGAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGGTAACCGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTGCAGATTGGTCGCCTGGAAGTGATGGATGCTCGTTTGCAAGGTCCGGACTGGGCGGTGACCGACCTCGATCTCAGCTTGCGCAACATGACCTTCAGTAAAGATGACTGGCAGACACAGGAAGGCAAACTGTCGATGa             <  1:173957/275‑1 (MQ=255)                                                                                                                                                                    ggACATTAACCGGAAACGCGcagcgtaacgcgatcgttatcaatactgccttcaatcagtacattggtggcaggaacatcattgagcgaaagcgatccg                                                                                                                                                                                           <  2:301510‑M2/99‑80 (MQ=255)                                                                                                                                                                        aTTAACCGGAAACGCGcagcgtaacgcgatcgttatcaatactgccttcaatcagtacattggtggcaggaacatcattgagcgaaagcgatccggcac                                                                                                                                                                                       >  1:301521‑M2/1‑16 (MQ=255)                                                                                                                                                                             cccgAAACGAGCAGCGTAACGCCGACGGCAGCTGGCAAGTTGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTGCAGATTGGTCGCCTGGAAGTGATCGATGCTCGTTTGCAAGGTCCGGACTGGGCGGTGACCGACCTCGATCTCAGCTTGCGCAACATGACCTTCAGTAAAGATGACTGGCAGACACAGGAAGGCAAACTGTCGATGAACGCTAGCGAg  <  2:114828/272‑1 (MQ=255)                                                                                                                                                                                       |                                                                                                                                                                                                                                                                         TGGTCACCAAAAGCCGGTAAAGTGCTGGGTACGAAGGCGCAGATTCAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTGCAGATTGGTCGCCTGGAAGTGATCGATGCTCGTTTGCAAGGTCCGGACTGGGCGGTGACCGACCTCGATCTCAGCTTGCGCAACATGACCTTCAGTAAAGATGACTGGCAGACACAGGAAGGCAAACTGTCGATGAACGCTAGCGAG  >  CP009273/3824270‑3824716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.