New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4307226 =	25 (1.440)	6 (0.370)	6/286	NT	25.3%	coding (487/681 nt)	phnL	ribophosphonate triphosphate synthase subunit; putative ABC transporter ATP‑binding protein
	?	CP009273	4307618 =	12 (0.740)					coding (95/681 nt)	phnL	ribophosphonate triphosphate synthase subunit; putative ABC transporter ATP‑binding protein

GCTGAGATACGCGGGATGACGCGCAGAAACTGGCTCACCCAGCCGACGGTGGTTTTGCGGATTTCCACCACTTTGCGCGCTGGCGCGGTGACCAGGTCTACCCACTCGTCACCGTGTTTGATCTGGATTTGACCTTCGTCGGGCAGATAGTTGGCGTACAGCGAGCGTAGCAGAGTTGATTTGCCGCTGCCGGAATGGCCGTGGAGCACCACGCATTCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCT  >  CP009273/4307393‑4307854                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                             ggggagaTACGCGGGATGACGCGCAGCAACTGGCTCACCCAGCCGACGGTGGTTTTGCGGATTTCCACCCCTTTGCGCGCTGGGGCGGTGACCAGGTCGACCCACTCGTCACCGTGTTTGATCTGGATTTGACCTTCGTCGGGCAGATAGTTGGCGTACAGCGAGCGTAGCAGAGTTGATTTGCCGCTGCCGGAATGGCCGTGGAGCACCACGCATTCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTg                                                                                                                                                                                             <  2:235136/272‑1 (MQ=255)     agaTACGCGGGATGACGCGCAGAAACTGGCTCACCCAGCCGACGGTGGTTTTGCGGATTTCCACCACTTTGCGCGCTGGCGCGGTGACCAGGTCTACCCACTCGTCACCGTGTTTGATCTGGATTTGACCTTCGTCGGGCAGATAGTTGGCGTACAGCGAGCGTAGCAGAGTTGATTTGCCGCTGCCGGAATGGCCGTGGCGCACCACGCATTCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGcgtg                                                                                                                                                                                         >  1:116261/1‑272 (MQ=255)                                                               ttcaccccctgtGCGCGGTGGCGCGGTGCCCTGGTCTACCCACTCGTCACCGGTTTTGAGCTGGATTTGACCTTCGTCGGGCAGATAGTTGTCGTACAGCGAGCGTAGCAGAGTTGATTTGTCGCTGCCGGAATGGCCGTGGAGCACCACGCATTCGCCCGCGTTGACGGGGAGCGAGGCGCGATTGAGGCCGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGGGGtt                                                                                                                                <  2:116259/263‑1 (MQ=255)                                                                                                gTCTTCCCACTCGTCACCTTGTTGGATCTGGATTTGACCTTCGGCGGGCAGATAGTTGGCGTACAGCGAGCGTAGCAGAGTTGATTTGCCGCTGCCGGAATGGCCGTGGAGCACCACGCATTCGCCCGCGTTGACGATGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATcc                                                                                              <  1:125930/275‑1 (MQ=255)                                                                                                 tCTACCCAGTCGTCACCGTGTTTGATCTGGATTTGACCTTCGTCGGGCAGATAGTTGGCGTACAGCGAGCGTAGCAGAGTTGATTTGCCGCTGCCGCAATGGCCGTGGAGCACCACGCATTCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATcc                                                                                              <  1:179856/274‑1 (MQ=255)                                                                                                   tACCCACTCGTCACCGTGTTTGATCTGGATTTGACCTTCGTCGGGCAGATAGTTGGCGTACAGCGAGCGTAGCAGAGTTGATTTGCCGCTGCCGGAATGGCCGTGGAGCACCACGCATTCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGc                                                                                                                                         >  1:100760/1‑229 (MQ=255)                                                                                                             tctccGTGTTTGGTTTTGATTTGACCTTCGTCGGGCAGATAGTTGGCGTACAGCGGGCGGAGCAGAGTTGATTTGCCGCTGCCGGAATGGCCGTGGAGCACCACGCATTCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGTGGAg                                                                                 <  1:329469/272‑1 (MQ=255)                                                                                                                                                                 gcgagcgTAGCAGCGTTGATTTGCCGCTGCCGGAATGGCCGTGGAGCACCACGCATTCGCCCGCGTTGACGGTGAGCTAGGCGCGATTGAGGACGGGCAGGCTCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCTTTTTATCCGACCTACGGGGAGCGCATTTGTACTCGGGATAAGGCGTTTCCCCTCCACGCGGCACCGGTTc                                >  2:147502/1‑272 (MQ=255)                                                                                                                                                                    agcgTAGCAGAGTTGATTTGCCGCTGCCGGAATGGCCGTGGAGCACCACGCATTCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTGGGCGGCCGGAGAAGGCGTTGAGGCCGCATCTGGCACCGGCTCaagcat                          >  2:86334/1‑271 (MQ=255)                                                                                                                                                                            tggcaccatcgacattttccggtggcgaacagcagcgcgtcaacatcgcccgcgTTGACGGTGAGCGAGGCGCGATTGAGGATGGGCAGGCGCACGCCGTTTTGCt                                                                                                                                                                                           >  2:302585‑M2/55‑106 (MQ=255)                                                                                                                                                                              gcaccatcgacattttccggtggcgaacagcagcgcgtcaacatcgcccgcgTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGa                                                                                                                                                                               >  2:244215‑M2/53‑116 (MQ=255)                                                                                                                                                                                accatcgacattttccggtggcgaacagcagcgcgtcaacatcgcccgcgTTGACGGTGAGCGAGGCGCGATTGAGGATGGGCAGGCGCACGCCGTTTTGCTGGTg                                                                                                                                                                                       <  1:302596‑M2/56‑1 (MQ=255)                                                                                                                                                                                  catcgacattttccggtggcgaacagcagcgcgtcaacatcgcccgcgTTGACGGTGAGCGAGGCGCGATTAAGGACGGGCAGGCGCCCGCCGTTTTGCGGGTGCAGGATGAAGGt                                                                                                                                                                           <  1:244223‑M2/68‑1 (MQ=255)                                                                                                                                                                                     ttGCCGCTGCCGGCATGGCCGTGGAGCACCACGCATTCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACAcc         <  1:86336/275‑1 (MQ=255)                                                                                                                                                                                         cGCTGCCGGAATGGCCGTGGAGCACCACGCATTCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGAAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgcc                                                 <  1:205740/231‑1 (MQ=255)                                                                                                                                                                                             gacGGAAGGGGCGTGGAGCACCACGCATTCGCGCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCt  <  1:147505/272‑1 (MQ=255)                                                                                                                                                                                                  tggcgaacagcagcgcgtcaacatcgcccgcgTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTg                                                                                                                                                                                          >  1:53923‑M2/33‑85 (MQ=255)                                                                                                                                                                                                      gaacagcagcgcgtcaacatcgcccgcgTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGc                                                                                                                                                                                      <  2:53921‑M2/57‑1 (MQ=255)                                                                                                                                                                                                                        ttCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACcagcag    <  1:3882/245‑1 (MQ=255)                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                             GCTGAGATACGCGGGATGACGCGCAGAAACTGGCTCACCCAGCCGACGGTGGTTTTGCGGATTTCCACCACTTTGCGCGCTGGCGCGGTGACCAGGTCTACCCACTCGTCACCGTGTTTGATCTGGATTTGACCTTCGTCGGGCAGATAGTTGGCGTACAGCGAGCGTAGCAGAGTTGATTTGCCGCTGCCGGAATGGCCGTGGAGCACCACGCATTCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCT  >  CP009273/4307393‑4307854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.