Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009273	578856	578879	24	2 [1]	[1] 2	tfaX/appY	pseudogene, DLP12 prophage;Phage or Prophage Related/global transcriptional activator; DLP12 prophage

TGAATGTGACTTGATAAGAAATGCAAGTAAAAATGATACTCTTTTTATTTTAAATTCAAA  >  CP009273/578800‑578859                                                        |     tgAATGTGACTTGACAAGAAATGCAAGTAAAAATGATACTCTTTTTATTTTAAAtt      >  1:241431/1‑56 (MQ=255)     tgtgACTTGATAAGAAATGCAAGTAAAAATGATACTCTTTTTATTTTAAATTCaaa  <  2:241423/56‑1 (MQ=255)                                                        |     TGAATGTGACTTGATAAGAAATGCAAGTAAAAATGATACTCTTTTTATTTTAAATTCAAA  >  CP009273/578800‑578859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑