Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 3280518 3280529 12 3 [1] [1] 2 agaI/yraH galactosamine‑6‑phosphate isomerase/putative fimbrial‑like adhesin protein

AACTTGTTCTATTAATAAATCACCTCGTATTCTGACTCG  >  CP009273/3280526‑3280564
    |                                  
aaCTTGTTCTATTAATAAATCACCTCGTATTCTGa      >  1:297363/1‑35 (MQ=255)
    tGTTCTATTAATAAATCACCTCGTATTCTGACTCg  <  2:297352/35‑1 (MQ=255)
    |                                  
AACTTGTTCTATTAATAAATCACCTCGTATTCTGACTCG  >  CP009273/3280526‑3280564

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: