Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 2779610 2779664 55 2 [1] [1] 2 ileY/ygaQ tRNA‑Ile/uncharacterized protein; putative enzyme

AAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTT  >  CP009273/2779661‑2779714
    |                                                 
aaGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTAt      >  1:254104/1‑50 (MQ=255)
    aGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGttt  <  2:254096/50‑1 (MQ=255)
    |                                                 
AAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTT  >  CP009273/2779661‑2779714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: