New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1203261	5 (0.150)	17 (0.550)	16/292	0.7	86.1%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	= 1205058	1 (0.030)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

GTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCA  >  CP009273/1202995‑1203478                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                          ttccagacaaccagagtgtcacctgccgctaatgtcctgagcaggtttttcagtcccggcctttcggactttgtgccgcttatcttgtcttcaaaaatcagctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcntgttaaatccccctggtaaaagccggaatgatgccatttgcttgttatttcttcattttcttaaacgTTGGTTTGGGAGAATGAGCAAAAc                                                                                                                                                                                                                   <  1:502856‑M1/24‑1 (MQ=255)                                    cctgagcagttttttcagtcccggcccttcggacgttgtgccgcttatcttgtcttcaaaaatcagctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagcccataagcatgttaaatccccctggtaaaagcaggaatgattcnatttgcttngtatttcttcatttttataaacgTTGGTTTTGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACACACcgga                                                                                                                                                                                <  1:460005‑M1/59‑2 (MQ=255)                                                                       gaagactaCTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgt                                                                                                                                                                                           >  1:53569‑M1/4‑197 (MQ=255)                                                                           actactTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcc                                                                                                                                                                                       <  2:53568‑M1/229‑37 (MQ=255)                                                                                         ttGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGGTTGGGAGAAGGatctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggcagaaatgcaatggtgccgctttttctgctgaaga                                                                                                                           >  1:102663‑M1/1‑179 (MQ=255)                                                                                              ggaggaACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGATCTCGAAAACCTTGGTTTGGGAGAAGTctctgcattacctgttggtgtcccggtt                                                                                                                                                                                               >  1:282636‑M1/1‑174 (MQ=255)                                                                                                             cGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAACCGGCTCTCGAAAACCTCGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgcaatgaaatggtgccgctttttctgctgcagaatacccggacctggccacgg                                                                                                       >  1:29242‑M1/1‑159 (MQ=255)                                                                                                                           cgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt                                                                                                                                                               <  2:489982‑M1/76‑1 (MQ=255)                                                                                                                               ttacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATg                                                                                                                                                           >  1:489989‑M1/126‑205 (MQ=255)                                                                                                                                 ccAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggct                                                                                                                                                            >  2:506313‑M1/1‑139 (MQ=255)                                                                                                                                     ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa                                                                                                                                                        <  1:506320‑M1/202‑68 (MQ=255)                                                                                                                                         gagaAGGGGCGGCACGACCAGTTGCTTATGGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATAAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgaattacctgttggtgtcccggttccgtggccttcagccactccgccancaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccgaaactggcaaaggcttaaccgacaaataaattgactgatta                                                                           >  1:496815‑M1/1‑131 (MQ=255)                                                                                                                                            ctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgc                                                                                                                                                                                                            <  2:288119‑M1/31‑1 (MQ=255)                                                                                                                                               tgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAcc                                                                                                                                                                  <  1:81324‑M1/73‑1 (MQ=255)                                                                                                                                               gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgcagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtgg                                                                     >  1:74865‑M1/1‑125 (MQ=255)                                                                                                                                                gttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca                                                                                                                                                                                                        >  1:288123‑M1/109‑143 (MQ=255)                                                                                                                                                   ctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt                                                                                                                                                              >  2:81323‑M1/106‑182 (MQ=255)                                                                                                                                                      gtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg                                                                                                                                                                                                                           <  1:324706‑M1/16‑1 (MQ=255)                                                                                                                                                          tttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCa                                                                                                                                                                                                                       >  2:324702‑M1/99‑118 (MQ=255)                                                                                                                                                                gatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa                                                                                                                                                                                                                      <  2:260278‑M1/21‑1 (MQ=255)                                                                                                                                                                    cgcgtaaatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACt                                                                                                                                                                                                                  >  1:260282‑M1/89‑113 (MQ=255)                                                                                                                                                                       gtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATc                                                                                                                                       <  1:219599‑M1/100‑1 (MQ=255)                                                                                                                                                                        cACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcatccccttcgccaacaggcnggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtgggaagtttattcgtggctgggatgag                                            >  1:596448‑M1/1‑100 (MQ=255)                                                                                                                                                                           atagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTa                                                                                                                                   >  2:219597‑M1/82‑185 (MQ=255)                                                                                                                                                                                  tcgccggggaagccgcaagaATCCGGTGGGCGATATCAAAGCGGATGGCACTTTGCAAACGGCTGTCGAAAACCTTGGTGTGGGAGAAGGctctgcattaccgggtggtgtcccggttccgtggccttcatccactccgccaacaggctggctgaaatgcaatggtgccggtttttctgctgaagaagacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagtttattcgtggctgggatgacgggcggggga                                  <  2:29241‑M1/266‑186 (MQ=255)                                                                                                                                                                                   taagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgc                                                                                                                                                                                                            <  1:463232‑M1/31‑1 (MQ=255)                                                                                                                                                                                       catgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca                                                                                                                                                                                                        >  2:463225‑M1/70‑104 (MQ=255)                                                                                                                                                                                              ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGTAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAAGGCGTGTGTTGCCGTTGTTGcta                      >  2:5361/1‑273 (MQ=255)                                                                                                                                                                                                 ccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtata                                                                                                                                                                    <  1:536543‑M1/71‑1 (MQ=255)                                                                                                                                                                                                  aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAAtt                   <  1:5362/274‑1 (MQ=255)                                                                                                                                                                                                     ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg                                                                                                                                                                >  2:536535‑M1/56‑130 (MQ=255)                                                                                                                                                                                                                ggttttcaaatCGGTGGGCACTGTGCAAACGGCTCTCGGATACCTTGGTTTGGGGGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagtttattcgtggctgggatgacgggcgggggattgatacaggtcgctctattttaagtatt     <  2:596439‑M1/269‑215 (MQ=255)                                                                                                                                                                                                                  gatttatggcatgtggttgttatttcttcgttttcttgagcgGTGGTTTGGGAGAAGGAGCAAAACTCATAGCAGCAACGGCTACATGAGGACGCACCGGTTTCATAGCTATACCGGTGATGATTGGGGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCa  >  2:604351‑M1/43‑275 (MQ=255)                                                                                                                                                                                                                  gaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa                                                                                                                                                             <  1:119624‑M1/78‑1 (MQ=255)                                                                                                                                                                                                                      gatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt                                                                                                                                                         >  2:119623‑M1/39‑120 (MQ=255)                                                                                                                                                                                                                                  ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGTTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTccc                                                            <  2:525909‑M1/175‑1 (MQ=255)                                                                                                                                                                                                                                    gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTACGATtggtg                                                                                                                                                    <  1:129434‑M1/87‑1 (MQ=255)                                                                                                                                                                                                                                      tatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGtt                                                        >  1:525917‑M1/23‑201 (MQ=255)                                                                                                                                                                                                                                       tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctc                                                                                                                                                                                                                        >  1:209627‑M1/1‑37 (MQ=255)                                                                                                                                                                                                                                       tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTa                                                                                                                                   >  2:276711/1‑125 (MQ=255)                                                                                                                                                                                                                                        tttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTACGATTGGTGGTAt                                                                                                                                                >  2:129433‑M1/21‑111 (MQ=255)                                                                                                                                                                                                                                           aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgca                                                                                                                                                                                                                    <  2:209625‑M1/40‑8 (MQ=255)                                                                                                                                                                                                                                           aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCa                                                                                                                               <  1:276715/125‑1 (MQ=255)                                                                                                                                                                                                                                           aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACC‑‑TTATGATtgg                                                                                                                                                      <  1:104301/100‑1 (MQ=255)                                                                                                                                                                                                                                            aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagtttattcgtggctgggatgacgggcgggggattgatacaggtcggtctatt              >  1:153692‑M1/1‑32 (MQ=255)                                                                                                                                                                                                                                                 tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttc                                                                                                                                                                                    >  2:265811‑M1/1‑27 (MQ=255)                                                                                                                                                                                                                                                     gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagcc                                                                                                                                                                                <  1:265815‑M1/66‑44 (MQ=255)                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                          GTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCA  >  CP009273/1202995‑1203478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.