New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 47540	32 (0.930)	5 (0.160)	4/300	2.3	15.0%	coding (295/531 nt)	kefF	potassium‑efflux system ancillary protein for KefC, glutathione‑regulated; quinone oxidoreductase, FMN‑dependent
	?	CP009273	= 47670	27 (0.850)					coding (425/531 nt)	kefF	potassium‑efflux system ancillary protein for KefC, glutathione‑regulated; quinone oxidoreductase, FMN‑dependent
Rejected: Frequency below/above cutoff threshold.

TTCCTCCGCTCCTCAAACTTTGGATCGATAAAGTTTTCTCCCACGGCTGGGCTTACGGTCATGGCGGCACGGCGCTGCATGGCAAACATTTGCTGTGGGCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGGAATGGCAGGAGGCCCATCATGGATAGCCATACGCTGATTCAGGCGCTGATTTATCTCGGTTCGGCAGCGCTGATTGTACCCATTGCGGTACGTCTTGGTCTGGGATCGGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTGGGGGCTGCGACTGGTGACCGATGCCGAATCTATTCTGCACTTTGC  >  CP009273/47454‑47944                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                   ttCCTCCGCTCCTCAAACTTTGGATCGATAAAGTTTTCTCCCACGGCTGGGCTTACGGTCATGGCGGCACGGCGCTGCATGGCAAACATTTGCTGTGGGCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAACTTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTCAAGGCGACGGCAATCTACTGCGGGCTGAACTAGCTGCCACCGTTTGCCCTGCCCTGCACTTTTATTTGTGCCGACGAAATCCTTGAAGTGTAGGcgcg                                                                                                                                                                                                                           >  1:260189/1‑274 (MQ=255)                   gttGGAGCGATAAAGGTTTCGCCCACGGCTGGGCGTACGGTCATGGCGGCACGGGGCTGGATGGCAAGCGATTGCTGTGGGCGGTGACGACCGGGGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTctg                                                                                                                                                                                                        <  2:604110/274‑1 (MQ=255)                               taGTTTTCTCCGACGGCTGGGCTTACGGTACGGGCGGCAGGGGGCTGCATGGCAAACATTTGCTGTGGGCGGTGACGACCGGCGGCAGGGAAAGCCATTTTGAAATTGGTGTGCATCCGGGCATTGATTTTCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGCAATGGCag                                                                                                                                                                                            <  1:590282/274‑1 (MQ=255)                                    ttCTCCCCCGTCTGGGCTTAGGGTCATGGCTGCACGGCTCTGCATGGCAAACATTTGCTGTGGGCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGCTGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGGAATGGCAGGAGGc                                                                                                                                                                                       <  1:194268/275‑1 (MQ=255)                                                               ggcggcACGGGTCTGCATGGCAAACATTTGCTGTGGGCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAACTTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGGAATGGCAGGAGGCCCATCATGGATAGCCATACGCTGATTc                                                                                                                                                            <  1:250142/275‑1 (MQ=255)                                                                                  gCAAACATTTGCTGTGGGCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCgtttgccatgca                                                                                                                                                                                                                                                                        <  1:98737‑M2/148‑13 (MQ=255)                                                                                      aCATTTGCTGTGGGCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCAtgcactgc                                                                                                                                                                                                                                                                    <  2:98736/148‑1 (MQ=255)                                                                                           tGCTGTGGGCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCTAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGGAATGGCAGGAGGCCCATCATGGATAGCCATACGCTGATTACGGCGCTGCTTTCTCCCGGTTCgtgcgc                                                                                                                                >  2:248615/1‑270 (MQ=255)                                                                                               ggggggggggagtacCGGCGGCGGGGAACGATGTTTTGGAAGTGGGGCGCTTCCGTGCTTGGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGGAATGGCAGGAGGCCCATCATGGATAGCCATACGCTGATTCAGGCGCTGATTTATCTCGGTTCGGCAgcgc                                                                                                                              <  2:291659/260‑1 (MQ=255)                                                                                                  ggCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGACCTGGCTGCCACCgtttgccatgccgcgccgtgccgccatgaccgtaagcccagccgtgggagaacactttatcgatccaaagtttgaggagcggaggactgctgtac                                                                                                                                                                                     <  2:468075‑M2/215‑96 (MQ=255)                                                                                                  ggCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCgtttgccatgcagcgccgtgccgccatgaccgtaagccca                                                                                                                                                                                                                                            <  1:439128‑M2/160‑41 (MQ=255)                                                                                                  ggCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGGAATGGCCGGAGGGCCCTCCTGGATAGCCATACGCTGCTTCCGGCGCTGAGTTATCTTGGTTCGGcc                                                                                                                                  >  1:291663/1‑265 (MQ=255)                                                                                                      gTGACGACCGGCGGCGGGGAAANCCATTTTGNAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCgtttgccatgcagcgccgtgccgccatgaccgtaagcccagccgtgggagaaaactttatcgatgcaaagttttaggagcggaggaatgctgtaccact                                                                                                                                                                                 >  1:468082‑M2/1‑116 (MQ=255)                                                                                                      gTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCgtttgccatgcagcgccgtgccgccatgaccgtaagcccagccg                                                                                                                                                                                                                                        >  2:439123‑M2/1‑116 (MQ=255)                                                                                                                      gggAAAGCCATTTTGAAATTGATGCGCAGCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTc                                                                                                                                                                                                                         >  1:487699/1‑159 (MQ=255)                                                                                                                          aaGCCATTTTGAAATGGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACta                                                                                                                                                                                                                     <  2:487692/159‑1 (MQ=255)                                                                                                                                ttttGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCgtt                                                                                                                                                                                                                                                                                 <  1:358524‑M2/93‑4 (MQ=255)                                                                                                                                  ttGAATTTGGTGCGTGTGCGGGCTTTGAGGGGCTGTCGCAGCCGCGACTGGCGACGGCTATCTCGTGCGGGCTGATCTGGGTGCGCGCGTGTGCCATGCACGGCACAGTTATTGGTGACGACGAAACCCACGAAGGGCAGGCGCGTCACTATAAGAAACGTCTGCTGGAATGGCAGGAGGCCCATCATGGATAGCCAGACGCTGAGTCAGGCGCTGATTTATCTCGGTTCGGCAGCGCTGATTGTACCCAGTGCGGTACGTCTTGGTCTGGGAt                                                                                          <  2:115717/274‑1 (MQ=255)                                                                                                                                    gAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCgtttgcc                                                                                                                                                                                                                                                                             >  2:358520‑M2/1‑86 (MQ=255)                                                                                                                                       aTTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAgg                                                                                                                                                                                                                               >  1:112799/1‑136 (MQ=255)                                                                                                                                           gTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAgg                                                                                                                                                                                                                               >  2:121461/1‑132 (MQ=255)                                                                                                                                           gTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGcgcg                                                                                                                                                                                                                           <  2:112798/136‑1 (MQ=255)                                                                                                                                           gTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACtata                                                                                                                                                                                                                   >  1:6246/1‑144 (MQ=255)                                                                                                                                           gTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACtat                                                                                                                                                                                                                    >  2:308064/1‑143 (MQ=255)                                                                                                                                               gcATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGcgcg                                                                                                                                                                                                                           <  1:121462/132‑1 (MQ=255)                                                                                                                                               gcATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGc                                                                                                                                                                                                                <  1:308068/143‑1 (MQ=255)                                                                                                                                               gcATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCa                                                                                                                                                                                                               <  2:6245/144‑1 (MQ=255)                                                                                                                                                                 gCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAAc                                                                                                                                                                                                             >  2:475371/1‑128 (MQ=255)                                                                                                                                                                     tCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTct                                                                                                                                                                                                         <  1:475378/128‑1 (MQ=255)                                                                                                                                                                                    gCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCgtttgccatgcactgcacctttatttgtgacgacgaaaccctcgaagggcaggcgtgggagaaaactttatcgatccaaagtttgaggagcggaggaatgctgtaccactgcatcggatgctgccagacgatcagatcggcgcgagacagcgcctcctgctcggcggcaatatcgatattgaagtcaggatagagttgataaagagagcgaatttcgacgccttccagcgtccttgc                                       >  1:230537‑M2/1‑38 (MQ=255)                                                                                                                                                                                       aCGGCAATCTACTGCGGGCTGAACTGGCTGCCACCgtttgcca                                                                                                                                                                                                                                                                            <  2:178882‑M2/43‑9 (MQ=255)                                                                                                                                                                                         ggCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAg                                                                                                                                                                                                                 >  1:125213/1‑100 (MQ=255)                                                                                                                                                                                           cAATCTACTGCGGGCTGAACTGGCTGCCACCgtttgccatgca                                                                                                                                                                                                                                                                        >  1:178884‑M2/1‑31 (MQ=255)                                                                                                                                                                                             aTCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAAc                                                                                                                                                                                                             <  2:125212/100‑1 (MQ=255)                                                                                                                                                                                                                      cACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGGAATGGCAGGAGGcc                                                                                                                                                                                      >  2:195472/1‑98 (MQ=255)                                                                                                                                                                                                                         cGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGt                                                                                                                                                                                                                          >  2:207658/1‑59 (MQ=255)                                                                                                                                                                                                                         cGTGTGCCATGTACTGCACCTTTATTTGTGGCGACTAAACCCTCGAAGGGCAGGAGCTTCACTATAAGCAACGTCTGCTGGAATGGCAGGAGGCACATCATGGATAGCCATACGCTGATTCAGGCGCTGATTTGTCTCGGTTCGGCAGCGCTGATTGTACCCATTGCGGTACGTCTTGGTCTGGGATCGGTACTTGGCTACCTGAGCGCCGGCTGCATTATTGGCCCGTGGGGGCTGCGACTGGTGACCGATGCCGAATCTATTCTGCACTTTGc  <  1:248619/275‑1 (MQ=255)                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                   TTCCTCCGCTCCTCAAACTTTGGATCGATAAAGTTTTCTCCCACGGCTGGGCTTACGGTCATGGCGGCACGGCGCTGCATGGCAAACATTTGCTGTGGGCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGGAATGGCAGGAGGCCCATCATGGATAGCCATACGCTGATTCAGGCGCTGATTTATCTCGGTTCGGCAGCGCTGATTGTACCCATTGCGGTACGTCTTGGTCTGGGATCGGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTGGGGGCTGCGACTGGTGACCGATGCCGAATCTATTCTGCACTTTGC  >  CP009273/47454‑47944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.