New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4252643 =	59 (1.720)	4 (0.130)	4/302	2.4	6.7%	intergenic (+9/‑125)	dusA/pspG	tRNA‑dihydrouridine synthase A/phage shock protein G
	?	CP009273	4252787 =	57 (1.780)					coding (20/243 nt)	pspG	phage shock protein G
Rejected: Frequency below/above cutoff threshold.

TGTTCCAGGGTATTCCTGGCGCGCGGCAGTGGCGGCGTTATTTAAGTGAAAATGCCCATAAAGCGGGTGCAGACATTAATGTGCTGGAACACGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGTTATTAAGGCGATTAAAGCACCAAAAGTGCCGAAATATCAGCGTTATGACCGCTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAAC  >  CP009273/4252513‑4253054                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                            tGTTCCAGGGTATTCGTGGCGCGCGGCAGTGGCGGCGTTATTTAAGTGAAAATGCCCATAAAGCGGGTGCAGACATTAATGTGCTGGAACACGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTNCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTtgt                                                                                                                                                                                                                                                                             >  1:599021/1‑275 (MQ=255)  gTTCCAGGGTATTCCTGGCGCGCGGCAATGGCGGCGTTATTTAAGTGAAAATGCCCATAAAGCGGGTGCAGACATTAATGTGCTGGAACACGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCCTGATTCTTGTAATTCCAGCAAGAGATTCCATATTTGGGGGAGAATAATGCTGGAACTACTTTTtgt                                                                                                                                                                                                                                                                             >  1:175976/1‑274 (MQ=255)             ttCCTGGCGCGCGGCAGTGGCGGCGTTATTTAAGTGAAAATGCCCATAAAGCGGGTGCAGACATTAATGTCCTGGAACACGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCACTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTTTTGTAATGCCAGCAAGCGATTTCATATTTGGGAGATCAAACTGCTGGAACTACTTTTTGTGATTGTCttttt                                                                                                                                                                                                                                                                 >  2:592264/1‑275 (MQ=255)                  ggCGCGCGGCAGTGGCGGCGTTATTTAAGTGAAAATGCCCATAAAGCGGGTGCAGACATTAATGTGCTGGAACACGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAGATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCATTAGATTATTTTTGGCATGATTCTTTTAATGCCAGAAAGAGCGTTAAGATTTTGGAGTGCATCATTATTTAACTACTTTTTGTGTTAGtttttttttttt                                                                                                                                                                                                                                                            >  2:313630/1‑271 (MQ=255)                   gcgcgcGGCCGTGGCGGCGTTATTTAAGTGAAAATGCCCATAAAGCGGGTGCAGACATTAATGTGCTGGCACCCGCGCTCAAACAGGTGGCGGATAAGCGTTAACTCTTCACAAAAATGTCTGCCCATTCACAACGCACTGAGCACTGTCTCGGGACGATTTTCTATTAACTACATAGCTTATTTTTAGCCTGCTTCTTGTAATGCCAGCAAGGACTTTAATATATGTGAGAGAAGCATGCCGGAACTGACTTTAGTGATNTTTTTTCTTGTCag                                                                                                                                                                                                                                                           >  2:520488/1‑274 (MQ=255)                                                  gcgggcgcttcaaGCGGGTGCCTACATTCATGTGCGGGAACCCTTGCTCACACTGGTGGCGGATAAGCGTTTACTTTTCACCAAAAAGTAGGCAAGTTTACCACGCCGTGCGCACCGTCGCGGGACGTTTTGCTGTTCAATCGATGGATTATTGTTGGTATGAGTCTTGTCATGCCAGCAAGGGGTGTCATTTTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTCTTGGTCATGCTGATGGTCACCGGCGTTTCGGTGCTggg                                                                                                                                                                                                                             <  2:107620/263‑1 (MQ=255)                                                   aaTGCCCATAAAGCGGGTGCAGACATTAATGTGCTGGAACACGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGAATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACTGGGGTTTCGTTGCTga                                                                                                                                                                                                                              >  1:344617/1‑271 (MQ=255)                                                                             tAATGTGCTGGAACACGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGATGGGCATTATCGTGGCGCTTGtgggggtgagg                                                                                                                                                                                                 >  2:129230/1‑265 (MQ=255)                                                                                   gCTGGAACACGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGCGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTGGCTGGGCTTTATCACCGCTCTTTTtgtctttttttccttt                                                                                                                                                                                           >  2:535482/1‑262 (MQ=255)                                                                                     ttgAACACGCGCTCAAACTGGTGTCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCTCCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTa                                                                                                                                                                                          <  1:129231/272‑1 (MQ=255)                                                                                     tGGAACACGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGtt                                                                                                                                                                                                                                   >  2:273556/1‑233 (MQ=255)                                                                                     tGGAACACGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGGGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGGATTATGGCCGCGTGGGTTGTGGTCAGGGCtattat                                                                                                                                                                                         >  2:159631/1‑275 (MQ=255)                                                                                      ggAACACGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATg                                                                                                                                                                                        <  2:599012/275‑1 (MQ=255)                                                                                         acacGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTg                                                                                                                                                                                                                               <  1:273560/233‑1 (MQ=255)                                                                                           ggcacggcacaccggtggCCGAGANGCGTTAACTGTTCACCAAAAGATACTCTGAGGCACCGCGCCCGGCGCAGCGTCGCGTGGTGTGTTGCAGGTAGATCTATAGAGTATTTTGGGCATGATTCTTGTAGTGCCAGCAAGAGATGTCATAGTGGGGAGAGAATCAGGGTGGAACTACTTTTTGGGATCGGCTTTTTGGTGATGCGGATGGTAACCGGCGTTTCGTTGCCGGGGATTATCGCGGCGCTGGTTGTGGCGACGGCCATTATGTTCCt                                                                                                                                                                                   <  2:403077/262‑1 (MQ=255)                                                                                            cgcgCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCCCCGGCGTTTCGTTGCTGGGTATTATCTCCGTGGTGGTTGTGTCGAGGGCCAtgcgtttcgc                                                                                                                                                                                   >  2:99028/1‑265 (MQ=255)                                                                                              ggcTTAAACGTGTGTCGGATAATCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGGGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCANGATTCTTGTAAGGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTcgg                                                                                                                                                                                <  1:592273/274‑1 (MQ=255)                                                                                                 tCAAGCTGGTGTCGGATTAGCTTTAACTTTTCACCAAAAATTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCGTGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTcggcg                                                                                                                                                                              <  1:288243/274‑1 (MQ=255)                                                                                                   aaaCTGGTGGCGGATAAGCGTTAACTTTTCTCCAACAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGTGAGCATCATGCTGGAACTACTTTTTGTGATTGGTTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGt                                                                                                                                                                            <  1:293772/274‑1 (MQ=255)                                                                                                      cTGATGGCGANTTAGCGTTTACTTTTCACCAAATAGTAGTCACATTCACCATGCCCTTCGCACCGTCTCGTGTCGTTTTGCTGTTAAATCAATTGATTATTTTTTGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTTTGAGAGCATCATGCTGGCACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCCTTATCGCCGCGCTGGTTGTGGCGGCGGCCATTATGTTCCTCGGCGGTATg                                                                                                                                                                         <  2:77516/274‑1 (MQ=255)                                                                                                               gATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCTACGGCCATTATGTTCCTCGGCGTTATGCTGTCAtta                                                                                                                                                                >  1:95573/1‑273 (MQ=255)                                                                                                                              ttCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTCTCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTTGGCGGTCTGTTTGCATTGATGAGTAAGTtgctgc                                                                                                                                                >  1:295219/1‑275 (MQ=255)                                                                                                                                      atagtttTCAGATTCACCACGCCCTTCGTACCGTCGTGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGTCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTta                                                                                                                                        >  1:313634‑M1/8‑275 (MQ=255)                                                                                                                                           ggttaaaTTTACCACGCCCTGCTCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGGATGATTCTTGGAATGCCAGCAAGAGATTTCATATGTGGTAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTTTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTactact                                                                                                                                   <  1:60936/271‑1 (MQ=255)                                                                                                                                                     tcctcGCTCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGTTTATTTTTGGTATGATTCTTGTAATGCCAGCAAGAGATTTCANATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTGGCTGCCGTGGTTACTACTGGCGATTGCg                                                                                                                         <  1:535490/271‑1 (MQ=255)                                                                                                                                                      ccaaGCCCTGGTAACCGTTGCGGGGGGTTTTTCTGTTTAATTAATTGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCg                                                                                                                         <  2:585179/274‑1 (MQ=255)                                                                                                                                                       cacGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCGCGGCGGTATGCTGGCCTTGATGATTAAGTTGCTGCCGTGTTtactacccagtattgtggc                                                                                                                       >  2:60935/1‑262 (MQ=255)                                                                                                                                                            ttgggcggtagTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGTCAGTAAGAGATTTCATATTTGGGAGAGCATCATGCTGGATCTTCTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGgtggtg                                                                                                                   <  2:95572/264‑1 (MQ=255)                                                                                                                                                            ccTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGGTGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGGGgtgt                                                                                                                  >  1:36363/1‑275 (MQ=255)                                                                                                                                                               gcgcACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTAGCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTtgc                                                                                                                                                   >  1:434761/1‑239 (MQ=255)                                                                                                                                                                cgcACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACAGGCGTATCGTTGCTGGGCATTATCGCCGCGCGGGTTGTGGCGACGGCCATGTTGTTCTTCGGCGGTATGCTGGCATTGAGGGTTAAGTTGGTGCCGTGGTTCCTATTGGCGAGTGCAGTGGTGgggg                                                                                                               >  1:585188/1‑274 (MQ=255)                                                                                                                                                                 aaatatgaaatctcttgctggcattacaagaatcatgccaaaaataatctattgatttaacagcaaaacgccccgcgacggtgcgcagggcgtggtgaatttgactactttttgTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTg                                                                                                                                            >  1:585150‑M2/115‑244 (MQ=255)                                                                                                                                                                     cGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGgtatt                                                                                                          >  1:411503/1‑274 (MQ=255)                                                                                                                                                                     cGTCGCGGGGCGTTTTGCTGTGAAATCAACAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCNACGGCCCTTATGTTCCTCGGCGGTATGCTGGCATTGATGATTCATTTTCTTCCGTGGTTACTACTGGCGATTGATGTGGTGTGGGttatt                                                                                                          >  1:489453/1‑274 (MQ=255)                                                                                                                                                                     atgaaatctcttgctggcattacaagaatcatgccaaaaataatctattgatttaacagcaaaacgccccgcgacggtgcgcagggcgtggtgaatttgactactttttgTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTta                                                                                                                                        <  2:585141‑M2/134‑1 (MQ=255)                                                                                                                                                                          cgGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGTGTGTGGCGACGGNCATTATGTNCCTCGGCGGTATGCTGGTCGTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGTTATTAAGGCg                                                                                                    >  1:453039/1‑275 (MQ=255)                                                                                                                                                                                         ttAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGTCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGTTATTAAGGCGCTTAAAGGACGaaaa                                                                                     >  1:238728/1‑275 (MQ=255)                                                                                                                                                                                                aaTGGATTATTTTTGGCATTGGTATGGTAATGCCAGCAAGGTATTTCATTTTTGGGAGATCATCATGCTGGAACTATTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGTTATTAAGGCGATTAAAGCACCAAAAGTGCCg                                                                               <  2:489446/274‑1 (MQ=255)                                                                                                                                                                                                 tcatgccaaaaataagctatttatttaacggcaaaacgccccgcgacggtgcgcagggcgtggtgaatttgactactttttgTGATTGGCTTTTTTGTCATGCTGATGGTCACCgg                                                                                                                                                                                                                                            >  1:474165‑M2/83‑116 (MQ=255)                                                                                                                                                                                                     gccaaaaataatctattgatttaacagcaaaacgccccgcgacggtgcgcagggcgtggtgaatttgactactttttgTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGtt                                                                                                                                                                                                                                        <  2:474158‑M2/38‑1 (MQ=255)                                                                                                                                                                                                     attattTTTGGCATGTTTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGGGTGGGTTATTAAGGCGATTAAAGCACCAAAAGTGCCGAAatat                                                                         <  1:99029/275‑1 (MQ=255)                                                                                                                                                                                                     attattTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTg                                                                                                                                                                                                                                                                        >  2:90485/1‑84 (MQ=255)                                                                                                                                                                                                         tttttGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCtt                                                                                                                                                                                                                                                                    <  1:90486/84‑1 (MQ=255)                                                                                                                                                                                                                          gTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGTGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGTGATTAAGGCGATTAAAGCACCAAAAGTGACGAAATATCAGCGTTATGACCGCTGGCGt                                                    >  1:85093/1‑275 (MQ=255)                                                                                                                                                                                                                                  aGCAAGAGATTTCATCTTTGGGAGGGCAACATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTANTACTGGCGATTGCGGTGGTGTGGGTTATTAAGGCGATTAAAGCACCAAAAGTGCCGAAATATCAGCGTTATGACCGCTGGCGTTACTAAgg                                            >  1:477445/1‑275 (MQ=255)                                                                                                                                                                                                                                  aGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCAt                                                                                                                                                                                            >  1:284193/1‑131 (MQ=255)                                                                                                                                                                                                                                    tgtgggaTTTCATATTTGGGAGGGCATCATGCTGGTACTTCTTTTTGTGTTTGGCTTTTTTGTCTTGCTGTTGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGTTATTAAGGCGATTAAAGCACCAAAAGTGCCGAAATATCAGCGTTATGACCGCTGGCGTTACTAAGGGa                                          <  2:238725/270‑1 (MQ=255)                                                                                                                                                                                                                                      agagATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATg                                                                                                                                                                                        <  2:284189/131‑1 (MQ=255)                                                                                                                                                                                                                                              cATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTc                                                                                                                                                                                  >  2:2837/1‑129 (MQ=255)                                                                                                                                                                                                                                              cATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCggtggt                                                                                                                    <  1:129289/191‑1 (MQ=255)                                                                                                                                                                                                                                                  tttGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTcggcg                                                                                                                                                                              <  1:2837/129‑1 (MQ=255)                                                                                                                                                                                                                                                    tGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGAt                                                                                                                             >  1:515876/1‑176 (MQ=255)                                                                                                                                                                                                                                                    tGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGTTATGAAGGCGATTAAAGCAACAAAAGTGACGAAATATTAGGGTTATGACCGCTGGCGTTACTAAGGGTGTGTggggtgtgtaat                          >  2:105416/1‑267 (MQ=255)                                                                                                                                                                                                                                                     gggAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGc                                                                                                                                                                                                                                           >  2:301706/1‑65 (MQ=255)                                                                                                                                                                                                                                                     gggAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGTTATTAAGGCGATTAAAGCACCAAAAGTGCCGAAAAATAAGCGTGATGAACGCGGGGGTTACTAAGGGATTNTCCGGATGTTcaca                         >  2:516224/1‑275 (MQ=255)                                                                                                                                                                                                                                                        agagCATCATGCTGGAACTACTTTTGGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCg                                                                                                                         <  2:515868/176‑1 (MQ=255)                                                                                                                                                                                                                                                         gagCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGttt                                                                                                                                                                                                                                       <  1:301710/65‑1 (MQ=255)                                                                                                                                                                                                                                                          agCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCg                                                                                                                                                                                                    >  2:390273/1‑99 (MQ=255)                                                                                                                                                                                                                                                              tcatGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCCTTATCGCCGCGCTGGTTGTGGCGACgg                                                                                                                                                                                                <  1:390277/99‑1 (MQ=255)                                                                                                                                                                                                                                                                 tGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTcg                                                                                                                                                                                 >  1:115406/1‑111 (MQ=255)                                                                                                                                                                                                                                                                 tGCTGGAACTACTTATAGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGTTATTANGGCGATTGAAGCAACAAAAGTGGCGAAATATCAGCGGTATGACCGCTGGCGGTACTAAGGGATTGTTGGGATGATCAAAACCTAAGGattt             >  1:520784/1‑275 (MQ=255)                                                                                                                                                                                                                                                                     ggAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTcggcgg                                                                                                                                                                             <  2:115405/111‑1 (MQ=255)                                                                                                                                                                                                                                                                            ctttttgTGTTTGGCTTTTTTGTCTTGCTGATGGTCACCGTCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTNTGTTCCTCGGCGGTATGCAGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGTTATTAAGGCGATTAAAGCACCAAAAGTGCCGAAATATCAGCGTTATGACCGCTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTACGGTTTTATCCTTAGaa   <  1:516232‑M2/267‑1 (MQ=255)                                                                                                                                                                                                                                                                            ctttttgTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCt                                                                                                                                                                                                              >  1:5024‑M2/8‑71 (MQ=255)                                                                                                                                                                                                                                                                            ctttttgTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGTTATTAAGGCGATTAAAGCACCAAAAGTGCCGAAATATCAGCGTTATGACCGCTGGCGTTACTAAGGGATTGTGAGGATGATCACAACCTAAGGTTTTATCCTTAgaaa  >  1:223731‑M2/8‑274 (MQ=255)                                                                                                                                                                                                                                                                            ctttttgTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTCGGCATTATCGCCCCTCTGGTTGTGTCGACGGCCATTATTTTCTTCGCCGCTATGCTGGCATTGATGAtt                                                                                                                                                          >  2:6346‑M2/8‑123 (MQ=255)                                                                                                                                                                                                                                                                                ttgTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGtt                                                                                                                                                                                                          <  2:5023‑M2/68‑1 (MQ=255)                                                                                                                                                                                                                                                                                ttgTGATGGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGt                                                                                                                                                      <  1:6347‑M2/120‑1 (MQ=255)                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                            TGTTCCAGGGTATTCCTGGCGCGCGGCAGTGGCGGCGTTATTTAAGTGAAAATGCCCATAAAGCGGGTGCAGACATTAATGTGCTGGAACACGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGTTATTAAGGCGATTAAAGCACCAAAAGTGCCGAAATATCAGCGTTATGACCGCTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAAC  >  CP009273/4252513‑4253054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.