Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009273	578972	579059	88	4 [2]	[2] 3	tfaX/appY	pseudogene, DLP12 prophage;Phage or Prophage Related/global transcriptional activator; DLP12 prophage

CAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAAACAAC  >  CP009273/578878‑578975                                                                                              |     cAAGAGTTTTCAGGTGCGTTGTAGTGAGATTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATaaaaaa      >  1:516109/1‑94 (MQ=255)     agGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAaacaac  <  2:516101/94‑1 (MQ=255)                                     aataaAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATaaaaaa      >  2:27654/1‑58 (MQ=255)                                         aaaaGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAaacaac  <  1:27655/58‑1 (MQ=255)                                                                                              |     CAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAAACAAC  >  CP009273/578878‑578975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑