New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 311124	3 (0.110)	3 (0.120)	3/248	NT	52.5%	coding (123/300 nt)	insE1	IS3 transposase A
	?	CP009273	= 311324	NA (NA)					coding (27/867 nt)	insF1	IS3 transposase B

CTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACG  >  CP009273/310869‑311390                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                           cTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCtgaatgaa                                                                                                                                                                                                                                                                      >  1:289002/1‑262 (MQ=255)                                               ccGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAGCAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATAGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAAATCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTTNTCTGAACGta                                                                                                                                                                                                            >  2:49583/1‑273 (MQ=255)                                                 gAGGTGACCTGTACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGCGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGaaa                                                                                                                                                                                                         >  1:555455/1‑274 (MQ=38)                                                                                                                                                                            acatcatgtgcctgaatttCTCAGTGAAGCCCTGATGCTTTCTGAACGCATCGTTGTTACTGCCGCAGCCCGTGAACTCAGCCTGatgtttttcaataaagacatacttcatttcaggcgctacgcgatggatgtcgcggccgtttggaggatagccagctctacatcccgttcttccagctggcgtttgagacgtgcaatctcggtagacatctccagttcacgttcagaagacgtctgctgattttgctgtttactgcgccagttgtagagtt                                                                              <  1:508404‑M1/266‑191 (MQ=255)                                                                                                                                                                                           aTTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGatgtttttcaataaagacatacttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgtttgagacgtgcaatctcggtaga                                                                                                                                               >  2:241454‑M1/1‑70 (MQ=255)                                                                                                                                                                                               cGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGatgtttttcaataaagacatacttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgtttgagacgtgcaatctcggtagacatc                                                                                                                                           <  1:241456‑M1/195‑130 (MQ=255)                                                                                                                                                                                                                                                    tGAACTCAGCCTGatgtttttcaataaagacatacttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgtttgagacgtgcaatctcggtagacatctccagttcacgttcagaagacgtctgctgattttgctgtttactgcgc                                                                                           <  1:552863‑M1/190‑178 (MQ=255)                                                                                                                                                                                                                                                     gAACTCAGCCTTatgattttcaataaagacatacttcattgcaggcgcaacgcgaagtatgtcgcggcctgttcatggatagacagctcttcatcccgttctgccagctggcgtttgagacgcgcaatctcggtagaaatctccagttcacgttcagaagacgactactgatgttgctgtttactgcgccagttgtcgcgttgtgattcataaaggatgagttcac                                                      >  2:75502‑M1/1‑12 (MQ=255)                                                                                                                                                                                                                                                     gAACTCAGCCTGatgtttttcaataaagacatacttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgtttgagacgtg                                                                                                                                                            >  2:200029‑M1/1‑12 (MQ=255)                                                                                                                                                                                                                                                       aCTCAGCCTGatgtttttcaataaagacatacttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgtttgagacgtgcaatctcggtagacatctccagttcacgttcagaagacgtctgctgattttgctgtt                                                                                                   <  2:292137‑M1/179‑170 (MQ=255)                                                                                                                                                                                                                                                         tCAGCCTGttgtttttcaataaagtcattcttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgtttgagacgtgcaatctcggtagacatctccagttcacgttcagaagacgtctgctgattttgctgtttactgcgccagttgtagagttgtgattcatacaggctgagttcacgggctgcggcagtaacaccgatgcgttcagcacgcttcagggcttcactgcg  <  1:469386‑M1/274‑267 (MQ=255)                                                                                                                                                                                                                                                         tCAGCCTGatgtttttcaataaagatatacttcatttcaggagcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgtttgagacgtgcaatctcggtagacatctccagttcacgttcagaagacgtctgctgattttgctgtttactgcgccagttgtagagttgtgattcatacagg                                                                <  1:359669‑M1/212‑205 (MQ=255)                                                                                                                                                                                                                                                         tCAGCCTGatgtttttcaataaagacatacttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgtttgagacgtgtaatctcggtagacatctccagttcacgttcagaagacgtctgctgattttgctgtttactgcgccagttgtagagttgtgattcatacaggctgagtccacgggc                                                  <  1:75502‑M1/226‑219 (MQ=255)                                                                                                                                                                                                                                                         tCAGCCTGatgtttttcaataaagacatacttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgtttgagacgtgcaat                                                                                                                                                        <  1:200031‑M1/124‑117 (MQ=255)                                                                                                                                                                                                                                                           aGCCTGatgtttttcaataaagacatacttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgtttgagacgtgcactctcggtagacctctccagttcacgttccgcatacgtctgctgattttgctgtttactgcgccagttgtagagtt                                                                              >  2:414673‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                                           aGCCTGatgtttttcaataaagacatacttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgtttgagacgtgcaatctcggtagacatctcca                                                                                                                                       >  2:225997‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                                           aGCCTGatgtttttcaataaagacatacttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctg                                                                                                                                                                          >  1:296540‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                                           aGCCTGatgtttttaaataaagacatacgtcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctcccagctggcgtttgagaagtgcaatctcggtagacatctccagttcacgttcaggagacgtctgctgattttgctgtttactgcgcnagttgtagagttgtgattcatacaggctgagttcacgggctgcggcagtaacac                                    >  1:425553‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                                             ccTGatgtttttcaataaagacatacttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgtttgagacgtgca                                                                                                                                                          >  2:374194‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                                               tGatgtttttcantaaagacatacttcatttaaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgtttgagacgtgcaatctcggtagacatctccagttcacgttcagaagaggtctgctgattttgctgtttactgcgcaagttgtagagttgtga                                                                          <  1:414680‑M1/196‑195 (MQ=255)                                                                                                                                                                                                                                                               tGatgtttttcaataaagacatacttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgtttgagacgtgcaatctcggtagacatctccagttc                                                                                                                                   <  1:225999‑M1/139‑138 (MQ=255)                                                                                                                                                                                                                                                               tGatgtttttcaataaagacatacttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgt                                                                                                                                                                      <  2:296536‑M1/104‑103 (MQ=255)                                                                                                                                                                                                                                                               tGatgtttttcaataaagacatacttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatccagttctgccagctggcgtttgagacgtgcaatctcggtagacatctccagttcacgttcagaagacgtctgctgattttgctgtttactgcgc                                                                                           <  2:106258‑M1/179‑178 (MQ=255)                                                                                                                                                                                                                                                                gatgtttttcaataaagacatacttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgtttgagacgtgcaatctcggtagacatctccagttcacgttcagaagacgtctgct                                                                                                               >  2:183805‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                                                gatgtttttcaataaagacatacttcatttcaggcgcttcgcgaagtatgtcgcggccttttggaggatagccagctcttcatcccgttctgccagctggcgtttgagacgtgcaatctcggtagacatctcca                                                                                                                                       >  1:154357‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                                                gatgtttttcaataaagacatacttcatttcaggcgcttcgcg                                                                                                                                                                                                                                  >  1:562181‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                           CTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACG  >  CP009273/310869‑311390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.