New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1203261	11 (0.400)	9 (0.370)	7/242	NT	44.2%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	= 1205058	13 (0.530)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

TGACGGTAATCCATGAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCC‑TTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAA  >  CP009273/1204803‑1205281                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                 tGACGGTAATCCATGAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTAGCAATCCCCCGCCCGTCATCCCACCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGCATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTTCATTTCAACCAGCCTGTTGCCGGAGAGGCTGAAGGCAACGGAAACGGTACACCAACAGGTANGGCCGAACCGTTGTCCAAAAcaatcg                                                                                                                                                                                                               >  2:375505/1‑270 (MQ=255)          tCCATGAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga                                                                                                                                                                                                       >  1:73010‑M2/1‑247 (MQ=255)                                         gaacagacagaaaTAGATCGACCTGTATCCATCCCTCGCCCGTCATCCCAGCCACGAATAAACTCTCCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCATTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCC‑TTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc                                                                                                                                                                       <  1:140272/264‑1 (MQ=255)                                                         agCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgaaatcgccaaacggattctt                                                                                                                                                        <  1:72426‑M2/274‑75 (MQ=255)                                                              ccTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCCATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGCAAAAGCGGCACCCTTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCCCGGAACAGGGACACCAACAGGTAATGCAGAGAC‑ATCTCCCAACCCAACATATATGAAAAAGAAGAAATAAAAAGCAAATGGCAACATTCCCGCTTTTAccctgaccccttc                                                                                                                                                 >  2:140271/1‑264 (MQ=255)                                                                 tgttCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGNCAGTTCCGNGTATTCTTCAGCCGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCC‑TTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa                                                                                                                                              <  1:375510/272‑1 (MQ=255)                                                                                                                                                    cAGTTCCGGGTAGTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgca                                                                                                                                                                                             >  2:386945‑M2/1‑109 (MQ=255)                                                                                                                                                      gTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCC‑TTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgcgc                                                                               >  1:32774/1‑253 (MQ=255)                                                                                                                                                          cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCC‑TTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa                                                                           <  2:32774/253‑1 (MQ=255)                                                                                                                                                                           aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCC‑TTCTCCCAAACCAACGTTTATGAAAATGAAGaaa                                                                                                                                                                                             >  2:30142/1‑122 (MQ=255)                                                                                                                                                                               atcggTACCATTGCATTTAAGCCAGCCGGTTGGGTGAGTGGCTGAAGGCCACGGAACAGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacatcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagtagt                                 >  1:341161‑M2/3‑82 (MQ=255)                                                                                                                                                                               aGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCC‑TTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc                                                                                                                                                                                         <  1:30142/122‑1 (MQ=255)                                                                                                                                                                                                 cagccagcCTGTTGGCGGAGTGGCTGGAGGCCACTGAACCGGGACACCAACAGGTAATGCAGAGCC‑TTCTCCCAAAACAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAGCAACaaa                                                                                                               >  1:377898/1‑178 (MQ=255)                                                                                                                                                                                                     cagacTGTTGGCGGAGTGTCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCC‑TTCTCCCCAACCACCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGATTTTACCAGGGGGATTTAACCTGCTTATTGGCTATGTACGGGTATCAACAAATGAc                                                                                                           <  2:377892/178‑1 (MQ=255)                                                                                                                                                                                                              cggaggtagacaaaatgccaccgacccgGGACACCGACAGGTACTGCAGAGccttctcccaatccaaggttttcgagagccgtttgcacagtgccatcctctttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtacctggtcgtgccgccccttctccaggctgtcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagtattcatcatccagatcggtggcaggcgtgccggt  >  2:72426‑M2/14‑51 (MQ=255)                                                                                                                                                                                                                          gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc                                                                                                                                                                                                           <  2:215558‑M2/62‑24 (MQ=255)                                                                                                                                                                                                                              gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga                                                                                                                                                                                                       >  1:215560‑M2/1‑35 (MQ=255)                                                                                                                                                                                                                                cACGGAACCGGGACACCAACAGGTAATGCAGAGCC‑TTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTa                                                                                                                                        >  2:460860/1‑122 (MQ=255)                                                                                                                                                                                                                                  cGGAACCGGGACACCAACAGGTAATGCAGAGCC‑TTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa                                                                                                                                                              >  1:564065/1‑98 (MQ=255)                                                                                                                                                                                                                                    gAACCGGGACACCAACAGGTAATGCAGAGCC‑TTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                                                                                                                    <  1:460867/122‑1 (MQ=255)                                                                                                                                                                                                                                      aCCGGGACACCAACAGGTAATGCAGAGCC‑TTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAg                                                                                                                                                          <  2:564057/98‑1 (MQ=255)                                                                                                                                                                                                                                       ccGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtt                                                                                                                                                                                                 <  1:117933‑M2/59‑34 (MQ=255)                                                                                                                                                                                                                                           gACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgca                                                                                                                                                                                             >  2:117933‑M2/1‑22 (MQ=255)                                                                                                                                                                                                                                                               agccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggc                                                                                                                                                   <  1:202028‑M2/81‑80 (MQ=255)                                                                                                                                                                                                                                                                gCC‑TTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATg                                                                                                                                                                                >  2:467994/1‑50 (MQ=255)                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                 TGACGGTAATCCATGAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCC‑TTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAA  >  CP009273/1204803‑1205281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.