Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009273	578955	579065	111	2 [1]	[1] 2	tfaX/appY	pseudogene, DLP12 prophage;Phage or Prophage Related/global transcriptional activator; DLP12 prophage

ATTATGATTGTGTATTTAATTGGTTGTTATTTGACTACTATCAACTTGTTTTAATTT  >  CP009273/579065‑579121  |                                                        aTTATGATTGTGTATTTAATTGGTTGTTATTTGACTACTATCAACTTGttt        >  1:238918/1‑51 (MQ=255)  ttATGATTGTGTATTTAATTGGTTGTTATTTGACTACTATCAACTTGTTTTAAttt  >  2:523788/1‑56 (MQ=255)  |                                                        ATTATGATTGTGTATTTAATTGGTTGTTATTTGACTACTATCAACTTGTTTTAATTT  >  CP009273/579065‑579121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑