| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,368,787 | C→G | 100% | intergenic (‑26/+37) | ampC ← / ← frdD | penicillin‑binding protein; beta‑lactamase, intrinsically weak/fumarate reductase (anaerobic), membrane anchor subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,368,787 | 0 | C | G | 100.0% | 223.7 / NA | 62 | intergenic (‑26/+37) | ampC/frdD | penicillin‑binding protein; beta‑lactamase, intrinsically weak/fumarate reductase (anaerobic), membrane anchor subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (32/30); total (32/30) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
TGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAGAACGCGCTCGTAGCTCAG > CP009273/4368551‑4369036 | tgACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGGCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGt > 1:153666/1‑274 (MQ=255) gagggggTGGTTTTTGGTGATGTAGGAATAGCCCCAGGTAAAGTANTAAGGTTTACCCTGATAAATTACCGCCACCGCCAGTCCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTGGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGtt < 2:365337/271‑1 (MQ=255) aGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATCCAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACAAATCAGCGTGACAACTGTCAGGATag > 1:210428/1‑275 (MQ=255) aGTAATAAGGATTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATag > 1:556453/1‑275 (MQ=255) gcgagccatNATAAATTACCGCCACCTCCATACCAGGTATCTTTTGGTGCTCTATAAGCGTGGTAATTGTGCGTATCACAAGATCGTTGATTTGTTGAGGGGCAGCAAATGGGGAGACAGAGGCGGTAAATAATAAAGCTCAGAGCGTAGTTTTTAACATAGTGTCTGGTGGCCATACAAAAAGGGCCGACATAGGCGGGCCGGATTTACATTGGCAATGCGTTAGATTGTAACGACACCAAGCAGCGTGACAACACTCAGGATAGCAGCCAGAc < 2:210426/267‑1 (MQ=255) tACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCTTTTTGAACATANGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTACAGATAGCAGCCAGACCg > 1:513078/1‑274 (MQ=255) ttgttgCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCggg < 2:463976/157‑1 (MQ=255) ttgttgCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCAGAGGCggg > 1:463983/1‑157 (MQ=255) tataAGCGGGGTAATTGTGCGATGCAGAATATCGGTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGCTAGATTGTAACGNCACCAATCNGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATcgc > 1:371721/1‑275 (MQ=255) taAGCGGGGTAATTTTTCTTTAGACATTATCGTTGATTTGTTGAGGGGCAAAAAAGGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCgt < 1:264038/275‑1 (MQ=255) aaGCGGGGTATTTGTGCTATTCACAATATCGTTGATTTGTTGAGGGGCAGAAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCgt < 1:91057/274‑1 (MQ=255) gTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCAATTGCCAGCAGGTACGGGGATTTACAGATCGTGCATTGCgggggtgagc > 2:91057/1‑269 (MQ=255) gTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAAACAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCAGCAGGGACGTGGATTTTAGGATCGTGCATGTCgaggtgaaga > 2:145418/1‑271 (MQ=255) ttGTGCGATGCACAATATCGATGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATCTACATTGGCGATGCGTTAGAtt > 1:562711/1‑163 (MQ=255) tgtggCGATGAACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATa < 1:145419/267‑1 (MQ=255) gtttcGATGAACAATATAGTTTATTTGTGGAGAGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAACACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGgtg < 2:153665/271‑1 (MQ=255) cGATGCTCAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACACAACGGGCCGCCATAGGCGGGCCGGCTTTACATTGGCGATTCGTTAGATTGTAACTACACCCATCAGCGt > 2:345207/1‑178 (MQ=255) gCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACa < 1:345212/178‑1 (MQ=255) tatCGTTGCTTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGCACATAGGGTCTGGTTTCCATACAAACCGGGCCGCCATCAGCGGGCCGGTTTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCACACCGTCGAAAACCCCTTTGCCCGCAGGTACATGGATTTTCAGCTCGGGCATAGCGTGTTGCCTACGgtggcccccaccccac > 2:446390/1‑261 (MQ=255) ttGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGAtt > 2:507302/1‑143 (MQ=255) ttGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGcc > 1:65238/1‑185 (MQ=255) aTTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGc > 1:334835/1‑108 (MQ=255) tttGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTaa < 1:507309/143‑1 (MQ=255) tttGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGAc < 2:65238/185‑1 (MQ=255) gttgAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGc < 2:334830/108‑1 (MQ=255) ttgAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGAtt > 1:8469/1‑135 (MQ=255) ggggCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTaa < 2:8469/135‑1 (MQ=255) gcaAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTa > 2:33174/1‑198 (MQ=255) aTGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTg < 1:33174/198‑1 (MQ=255) aGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACAtt > 2:516008/1‑99 (MQ=255) aGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGNAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCgtggtg > 1:474546/1‑219 (MQ=255) agagGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCg < 1:516016/99‑1 (MQ=255) agagGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCAGACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATa < 2:474539/219‑1 (MQ=255) ttaatAAGGCCCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAgg > 1:555672/1‑171 (MQ=255) taaGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACg < 2:555664/171‑1 (MQ=255) ggCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCa > 2:430348/1‑124 (MQ=255) ggCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATc > 1:277437/1‑189 (MQ=255) cAGAGCGTCGTTTTGAACATAGGTTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCgt < 2:277435/189‑1 (MQ=255) cAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGCCACCAATCAGCGTGACAACTGTCAGGAt < 1:430355/124‑1 (MQ=255) agCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGAtt > 1:480700/1‑86 (MQ=255) tcgtTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTaa < 2:480693/86‑1 (MQ=255) tcgtTTTGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACaa > 1:325139/1‑107 (MQ=255) ttgttGAACATAGGGTCTGGTGTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGAGTGTAACGACANCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGAGTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAGAAcgc < 1:446397/270‑1 (MQ=255) gtTTTGAACATAGTGTCTGGTTTCCATACAAAACGGGCTGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAGAAcgc < 1:73791/273‑1 (MQ=255) tttGAACATAGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGt < 2:325134/107‑1 (MQ=255) gaGGGGCTGGTTTCCATACAAACCGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAGAACGCGCTCGTAGCTc < 2:556445/273‑1 (MQ=255) aGGGTCTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTCGCGCTGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAAACCATTTGCCCGCAGGTACGTGGATTTTCAGAACGTGCAACGCGTGGTGCATACGGGGTAAACCACACCAAAGCGGCAGAACGATCATCAGGAAAAGGAAAAAGCAAACAAAAAAGCCATGGCCGAACGACAGAAcgctttcctgctccat > 2:29745/1‑262 (MQ=255) aGGGTCGGGTTTCCATGCAAAACGGGCCGCCATAGGCGGGCCGAGTTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATc > 1:417318/1‑165 (MQ=255) ggTCTGGTTTCCATACAAAACGGGCCGCCATAGGc > 1:120001/1‑35 (MQ=255) tCTGGTTTCCATCCAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGNCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGatcatc < 1:514033/209‑1 (MQ=255) tCTGGTTTCCATACAAAACGGGCCGCCAGAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCgt < 2:417311/165‑1 (MQ=255) cTGGTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTaa > 1:444391/1‑68 (MQ=255) tGGTTTCCATACAAAACGGGCCGCCATAGGCGGGc < 2:120001/35‑1 (MQ=255) gTTTCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGc > 1:50566/1‑48 (MQ=255) tttCCATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGac < 2:444384/68‑1 (MQ=255) ccATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATg < 2:50566/48‑1 (MQ=255) ccATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATAcg > 1:225845/1‑216 (MQ=255) cATACAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGCTTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGat > 2:254170/1‑196 (MQ=255) aCAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGAc < 2:225843/216‑1 (MQ=255) cAAAACGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGatcatc < 1:254172/196‑1 (MQ=255) aaaCGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGAt > 2:294616/1‑130 (MQ=255) aaCGGGCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCAt > 1:519656/1‑144 (MQ=255) | TGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAGAACGCGCTCGTAGCTCAG > CP009273/4368551‑4369036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |