| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,589,705 | A→T | 7.6% | L101Q (CTG→CAG) | yjjA ← | putative DUF2501 family periplasmic protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,589,705 | 0 | A | T | 7.6% | 276.7 / 10.0 | 85 | L101Q (CTG→CAG) | yjjA | putative DUF2501 family periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base A (35/43); new base T (3/4); total (38/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
GGGAAAAGGGCAGGAGAGAGCCGCGTCAGCCGGGTAACAGCTAAAACGCGGCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAGCAAGTTAGTTAATGACGCGAGCGACCAACCGCCTTCCTGTGTCGTGCTGTTTTGGTTGCCAAGTTCGCTGGCGGCGCTGGAGAGCGCATCTTTCCAGGACGCAGCATGCACCCCGGTGGAAATTAATGCGCTGGCGGCAATGGCA > CP009273/4589450‑4589974 | gggAAAAGGGCAGGAGAGAGCCGCGTCAGCCGGGTAACAGCTAAAACGCGGCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCGAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGt > 1:505561/1‑274 (MQ=255) cAGGAGAGAGCCGCGTCAGCCGGGTAACAGCTAAAACGCGGCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCNAGCGGAGTTGTTACGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGc < 1:478023/271‑1 (MQ=255) agaaaaaaAGGGGCGTTTGGAGGGGTAGGAAATGACGTTAAGAACTTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTcgcg < 2:323415/270‑1 (MQ=255) aGCTAATACGCGGCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCACCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTCTTGCTTcgcg < 1:560195/274‑1 (MQ=255) aGCAAAAACGGGCNGTTTCGCGGTTAAGGCAATGAAGTTCCGCCCCTGTTTTAACTCCAGTTCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTcgcg < 2:420127/274‑1 (MQ=255) ctataatgtgtcgTTTCGCGGTTCAGGAAATGAAGTGCAGCCCCTGTTTTAACACCAGATCGCAGGTTTTTGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTTTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCa < 1:188066/263‑1 (MQ=255) cTATAACGCGGTGTTTTGCGGTTCAGGAAATGAAGTTCAGCACCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCa < 1:246245/274‑1 (MQ=255) aaCGCGGCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATTTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCtt > 1:292823/1‑264 (MQ=255) gAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCtt > 2:27120/1‑237 (MQ=255) ttCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTcgcg < 1:27120/237‑1 (MQ=255) ccTCTTTTAACCCCAGTATGCATGTTTTGTTTTTTCCCTTTTCTGCCGGTGGAGTTTGTCCGATGTTATCCAGAGTGAGGTGCGGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGGCGAGATAGTTGGTGTCTGCTTTGTGCTCTTCACGGTTCAGGCCCAGCTTTTACAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTGGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCt < 2:505554/274‑1 (MQ=255) aGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGtttt > 1:456093/1‑181 (MQ=255) aGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTc > 1:352947/1‑182 (MQ=255) gATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTTCATAATGCCTGCGGCCTTGTTCCTGTTTTCTTCGCTTaattcctttttttct > 2:391865/1‑262 (MQ=255) cGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTTGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGc < 2:456086/181‑1 (MQ=255) cGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCa < 2:352942/182‑1 (MQ=255) gCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAANCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTCAGGCCTGGTTTCCgc < 1:391871/272‑1 (MQ=255) cAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCgctgct < 1:245916/275‑1 (MQ=255) ggTTTTCACCGTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCttt > 1:563921/1‑193 (MQ=255) ttCACCTTTTCTGCCATCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCt < 2:563913/193‑1 (MQ=255) aTCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGa > 2:166438/1‑144 (MQ=255) aTCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGc > 2:33701/1‑186 (MQ=255) aTCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAg > 2:555244/1‑231 (MQ=255) aGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGcc < 1:166439/144‑1 (MQ=255) aGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTg < 1:33701/186‑1 (MQ=255) aGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAGCAag < 1:555252/231‑1 (MQ=255) aTTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTAc > 2:562899/1‑135 (MQ=255) aTTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGc > 1:112501/1‑151 (MQ=255) aTTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCtt > 1:209858/1‑153 (MQ=255) aGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGAc < 1:562907/135‑1 (MQ=255) aGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTcgcg < 2:209856/153‑1 (MQ=255) aGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTcg < 2:112501/151‑1 (MQ=255) gTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCAt > 1:313033/1‑177 (MQ=255) gCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAGCAAGTTAGTTAATGACGCGAGCGACCAACCGCCTTc < 1:335092/253‑1 (MQ=255) cTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGc > 2:413957/1‑142 (MQ=255) cTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGtt < 2:313029/177‑1 (MQ=255) cTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTCGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCtt > 1:543558/1‑144 (MQ=255) tGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCtt > 1:349425/1‑143 (MQ=255) ccATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTcgcg < 2:543550/144‑1 (MQ=255) ccATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTcg < 1:413964/142‑1 (MQ=255) cATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTcgcg < 2:349420/143‑1 (MQ=255) cTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCa < 1:121050/65‑1 (MQ=255) cGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAGCAAGTTAGTTAATGACGCGAGCGACCAACCGCCTTCCTGTGTCGTGCTGTTTTGGTTGCCACGTTCGCTGGCGGCGCTGGCGAGCGCATCttt > 1:178349/1‑274 (MQ=255) gTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGc > 1:511065/1‑106 (MQ=255) aGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTcg < 2:511058/106‑1 (MQ=255) aTAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCtt > 1:86122/1‑102 (MQ=255) ttGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTcgct < 2:86122/102‑2 (MQ=255) ggTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAg > 1:18178/1‑168 (MQ=255) tcttctTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAGCAag < 2:18178/168‑1 (MQ=255) tttGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCtt > 2:523604/1‑85 (MQ=255) gCTCTTCACTGTTCAGGCCCAGCTTTTCCTGCTCCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTGTGCTTCGCGCCGTANTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAGCAAGTTAGTTAATGGCGCGAGCGACCAACCGCCTTCCTGTGTCGTGCTGTTTTGGTTGCCAAGTTCGCTGGCGGCGCTGGAGAGCGCATCTAGCCACCACGCAGCCTGCACCCCGGTGGaa < 1:394633/275‑1 (MQ=255) ctctTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTcgcg < 1:523612/85‑1 (MQ=255) ttCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCg > 2:125953/1‑42 (MQ=255) ttCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCgg > 2:278328/1‑49 (MQ=255) ttCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCa > 1:167045/1‑77 (MQ=255) aGGCCCATCTTTTCCAGCACCTGGTTCTTGATGTTTTCTGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAGCAAGTTAGTTAATGACGCGAGCGACCAACCGCCTTCCTGTGTCGTGCTGTTTTGGTTGCCAAGTTCGCTGGCGGCGCTGGAGAGCGCATCTTTCCAGGACGCAGCATGCACCCCGGTGGAAATTAATGCGCTggc < 1:141425/275‑1 (MQ=255) ggCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCAt < 1:125954/42‑1 (MQ=255) ggCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTAc < 1:278330/49‑1 (MQ=255) ggCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTAt < 2:167044/77‑1 (MQ=255) gCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCtt > 1:490220/1‑66 (MQ=255) gCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGc > 1:75007/1‑93 (MQ=255) gCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAGCAAGTTAGTTAATGACGCGAGCGACCAACCGCCTTCCTGTGTCGTGCTGTTTTGGTTGCCAAGTTCGCTGGGGGCGCTGGGGAGCGCAGCTTTCCCGGACGCAGCAGGCCACCCGGTGGGACNTAATGCGCTgctc > 2:422625/1‑271 (MQ=255) gCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTAACGACGCCAGCTTTTGCtt > 2:399664/1‑66 (MQ=255) cccttttcCCTGCTCCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCCGTATTGCAGAATGCCTTCGGc > 2:320506/5‑90 (MQ=255) cccttttcCCTGCTCCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGc > 2:215807/5‑90 (MQ=255) cccttttcCCTGCTCCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGc > 1:16242/5‑90 (MQ=255) cAGCTTTTCCAGCACCTGGTTCTTGATTTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCtt > 1:333771/1‑63 (MQ=255) aGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTcgcg < 2:490213/66‑1 (MQ=255) aGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTg < 2:75007/93‑1 (MQ=255) aGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACAGACGCAAGCTTTTGCTTcgcg < 1:399670/66‑1 (MQ=255) gCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCtt > 2:143004/1‑61 (MQ=255) gCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGc > 2:31088/1‑85 (MQ=255) gCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAGCAAGTTAGTTAATGACGCGAGCGGCCAACCGCCTTCCTGTTTCGTGCTGTTTTGGTTGCCAAGTTCGCTGGCGGCGCTGGAGAGCGCATCTTTCCAGGACGGCGCATGCACCCCGTGGGAAATTATTGAGCTCGCGGCAATg > 1:246234/1‑275 (MQ=255) gCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAGCAAGTTAGTTAATGACCCGAGCGACCAACCGCCTTCCTGTGTCGTGCTGTTTTGGTTGCCAAGTTCGCTGGCGGCGCTGGAGAGCGCATCTTTCCAGGACGCAGCATGCCCCCCGGTGGAAATTAATGCGCTGGCGGCACTg > 1:450994/1‑275 (MQ=255) gCTTTTCCAGCACCTGGTTCTTGATGTATTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGttt > 1:336037/1‑122 (MQ=255) ttttCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTcgcg < 2:333766/63‑1 (MQ=255) tttcCCTGCTCCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTTCAGAATGCCTGCGGCATTg < 1:320511/90‑1 (MQ=255) tttcCCTGCTCCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTg < 1:215809/90‑1 (MQ=255) tttcCCTGCTCCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTg < 2:16242/90‑1 (MQ=255) tttCCAGCTCCTTGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTCTCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAGCAAGTTAGTTAATGACGCGAGCGACCAACCGCCTTCCTGTGTCGTGCTGTTTTGGTTGCCAAGTTCGCTGGCGGCGCTGGAGAGCGCATCTTTCCAGGACGCAGCATGCACCCCGGTGGAAATTAATGCGCTGGCGGCAATGgca < 1:302165/275‑1 (MQ=255) tttCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGNTGCTAAGCAAGTAAGTTAATGACGCGAGCGACCAACCGCCTTCCTGTGTCGTGCTGTTTTGGTTGCCAAGTTCGCTGGCGGCGCTGGAGAGCGCATCTTTCCAGGACGCAGCATGCACCCCGGTGGAAATTAATGCGCTGGCGGCAATGgca < 1:475638/275‑1 (MQ=255) ttCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTcgcg < 1:143005/61‑1 (MQ=255) ttCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCa < 1:31088/85‑1 (MQ=255) ttCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCgc < 2:336032/122‑1 (MQ=255) ttCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTGACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAGCAAGTTAGTTAATGACGCGAGCGACCAACCGCCTTCCTGTGTCGTGCTGTTTTTGTTGCCAAGTTCGCTggcg < 1:465698/202‑1 (MQ=255) ctCCAGGACCTGGTTCTGGATGTTTTCGGCATCGGTTACCGATGTCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTGATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAGCAAGTTAGGTAATGACGCGAGCGACCAACCGCCTTCCTGTGTCGTGCTGTTTTGGTTGCCAAGTTCGCTGGCGGCGCTGGAGAGCGCATCTTTCCAGGACGCAGCATGCACCCCGGTGGAAATTAATGCGCTGGCGGCAATGgca < 2:178348/273‑1 (MQ=255) | GGGAAAAGGGCAGGAGAGAGCCGCGTCAGCCGGGTAACAGCTAAAACGCGGCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTATCCAGATTGAGTTGCTGACCATCTTTGGTTTTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAGGCCCAGCTTTTCCAGCACCTGGTTCTTGATGTTTTCGGCATCGGTTACCGACGCCAGCTTTTGCTTCGCGCAGTATTGCAGAATGCCTGCGGCATTGTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAGCAAGTTAGTTAATGACGCGAGCGACCAACCGCCTTCCTGTGTCGTGCTGTTTTGGTTGCCAAGTTCGCTGGCGGCGCTGGAGAGCGCATCTTTCCAGGACGCAGCATGCACCCCGGTGGAAATTAATGCGCTGGCGGCAATGGCA > CP009273/4589450‑4589974 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |