| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,909,689 | T→C | 100% | K35E (AAA→GAA) | proQ ← | RNA chaperone, putative ProP translation regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,909,689 | 0 | T | C | 100.0% | 53.2 / NA | 16 | K35E (AAA→GAA) | proQ | RNA chaperone, putative ProP translation regulator |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (8/8); total (8/8) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CTGCTTGCGAGCATGCTCTACATGTTGCTCGTCCAGCTCACCGCATGGGTTGCCGTCAAGATCGACACGCGTTGCGCCGGGTTTAACACCGTAAAGATAACGCCAGCTCGAAGTGTAGAGACGTAAAGCGGATCGCAATTGCGTTTTGCTCAGGTTCATTTCCCCAGCAACACGATCGACCAAATCCTGAAAAATACCGATTTTCAGCGGACGCGCTTCACCTTCCGCACTGAAACAGTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAAT > CP009273/1909486‑1909854 | ctgctTGCGAGCATGCTCTTCATGTTGCTCGTCCAGCTCACCGCATGGGTTGCCGTCAAGATCGACACGCGTTGCGCCGGGTTTAACACCGTAAAGATAACGCCAGCTCGAAGTGTAGAGACGTAAAGCGGATCGCAATTGCGTTTTGCTCAGGTTCATTTCCCCAGCAACACGATCGACCAAATCCTGAAAAACACCGATTTCCAGCGGACGCGCTTCACCTTCCGCACTGAAACAGTGGGGAAAACGTTCGGCCAGAAACGCGATTActtctt < 1:182480/275‑1 (MQ=255) tGCTCTACATGTTGCTCGTCCAGCTCACCGCATGGGTTGCCGTCAAGATCGACACGCGTTGCGCCGGGTTTAACACCGTAAAGATAACGCCAGCTCGAAGTGTAGAGACGTAAAGCGGATCGCAATTGCGTTTTGCTCAGGTTCATTTCCCCACCAACACGATCGACAAAATCCTGAAAAATACCGATTTCCAGAGGACGCGCTTCACCCTCAGCACTGACACAGAGGGGAAAACGTTCGGCCAGAAACTCGATTACTTCACTACTCCTTTTCaa > 2:463338/1‑275 (MQ=255) gCTCGTCCAGATCACCGCATGGGTTGCCGTCAAGATCGACACGCGTCGCGCCGGGTTTAACACCGTAAAGATAACGCCAGCTCGAAGTGTAGAGACGTAAAGCGGATCGCAATTGCGTTTTGCTCAGGTTCATTTCCCCAGCAACACGATCGACCAAATCCTGAAAAATACCGATTTCCAGCGGACGCGCTTCACCTTCCGCACTGaa > 1:553576/1‑208 (MQ=255) gTCCAGCTCACCGCATGGGTTGCCGTCAAGATCGACACGCGTCGCGCCGGGTTTAACACCGTAAAGATAACGCCAGCTCGAAGTGTAGAGACGTAAAGCGGATCGCAATTGCGTTTTGCTCAGGTTCATTTCCCCAGCAACACGATCGACCAAATCCTGAAAAATACCGATTTCCAGCGGACGCGCTTCACCTTCCGCACTGAAACAg < 2:553568/208‑1 (MQ=255) ccAGCTCACCGCATGGGTTGCCGTCAAGATCGACACGCGTTGCGCCGGGTTTAACACCGTAAAGATAACGCCAGCTCGAAGTGTAGAGACGTAAAGCGGATCGCAATTGCGTTTTGCTCAGGTTCATTTCCCCAGCAACACGATCGACCAAATCCTGAAAAATACCGATTTCCAGCGGACGCGCTTCACCTTCCGCACTGAAACAGTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCAt > 1:181888/1‑274 (MQ=255) cGCATGGGTTGCCGTCAAGATCGACACGCGTTGCGCCGGGTTTAACACCGTAAAGATAACGCCAGCTCGAAGTGTAGAGACGTAAAGCGGATCGCAATTGCGTTTTGCTCAGGTTCATTTCCCCAGCAACACGATCGACCAAATCCTGAAAAATACCGATTTCCAg > 2:222590/1‑166 (MQ=255) tGGGTTGCCGTCAAGATCGACACGCGTTGCGCCGGGTTTAACACCGTAAAGATAACGCCAGCTCGAAGTGTAGAGACGTAAAGCGGATCGCAATTGCGTTTTGCTCAGGTTCATTTCCCCAGCAACACGATCGACCAAATCCTGAAAAATACCGATTTCCAGCGGa < 1:222592/166‑1 (MQ=255) cagtagagcCGGGTTTAACCCCCTAAAGATACCGCAAGCTCGAAGTGTAGAGACGTAAATCGGATCGCAATTGCGTTTTGCTCAGGTTCATTTCCCCAGCAACACGATCGACCAAATCCTGAAAAATACCGATTTCCAGCGGACGCGCTTCACCTTCCGCACTGAAACAGTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAgcg < 2:480491/268‑1 (MQ=255) gtcGGATTTAAACCCGTAAAGGTAACTCAAGTACTAAGTGTAAAGAACTAAAGCGGATCGAAAGTGCGTTTTGCTCAGGTTCATTTCCCCAGCAACACGATCGACCAAACTCTTGAAAATACCGATTTCCAGCGGACGCGCTTCACCTTCCGCACTGAAACAGTGGGGAAAACGTTCGGCCAGATACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATGTTCCATGAAATTTCCTTATTACAACGGACGTAGCCAACAAGCGCAGGc < 2:181887/271‑1 (MQ=255) gATCGCAATTGCGTTTTGCTCAGGTTCATTTCCCCAGCAACACGATCGACCAAATCCTGAAAAATACCGATTTCCAGCGGACGCGCTTCACCTTCCGCACTGaa > 2:163593/1‑104 (MQ=255) gCAATTGCGTTTTGCTCAGGTTCATTTCCCCAGCAACACGATCGACCAAATCCTGAAAAATACCGATTTCCAGCGGACGCGCTTCACCTTCCGCACTGAAACAg < 1:163594/104‑1 (MQ=255) aaTTGCGTTTTGCTCAGGTTCATTTCCCCAGCAACACGATCGACCAAATCCTGAAAAATACCGATTTCCAGCGGACGCGCTTCACCTTCCGCACTGAAACAGTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAANTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAgcgc > 1:483455/1‑208 (MQ=255) ggTTCATTTCCCCAGCAACACGATCGACCAAATCCTGAAAAATACCGATTTCCAGCGGATGCGCTTCACCTTCCGCACTGAAACAGTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATta > 2:443698/1‑213 (MQ=255) cATTTCCCCAGCAACACGATCGACCAAATCCTGAAAAATACCGATTTCCAGCGGATGCGCTTCACCTTCCGCACTGAAACAGTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAAt < 1:443705/213‑1 (MQ=255) aaaaaTACCGATTTCCAGCGGACGCGCTTCACCTTCCGCACTGAAACAGCGGGGAAAACGTTCGGCCAGAAAcg > 1:267504/1‑74 (MQ=255) aTACCGAGTTCCAGCGGACGCGCTTCACCTTCCGAACTGAAACAGTGGGAAAAACGTTCGGCCAGTAGCGCGAt < 2:267502/74‑1 (MQ=255) | CTGCTTGCGAGCATGCTCTACATGTTGCTCGTCCAGCTCACCGCATGGGTTGCCGTCAAGATCGACACGCGTTGCGCCGGGTTTAACACCGTAAAGATAACGCCAGCTCGAAGTGTAGAGACGTAAAGCGGATCGCAATTGCGTTTTGCTCAGGTTCATTTCCCCAGCAACACGATCGACCAAATCCTGAAAAATACCGATTTTCAGCGGACGCGCTTCACCTTCCGCACTGAAACAGTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAAT > CP009273/1909486‑1909854 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |