New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2966073 =	36 (0.940)	11 (0.300)	7/296	NT	25.3%	coding (1149/1194 nt)	lplT	lysophospholipid transporter
	?	CP009273	2966170 =	31 (0.860)					coding (1052/1194 nt)	lplT	lysophospholipid transporter

TTTTGATTGGCGTGGTGGTACTGATTTTTTCCCTGCAACACGAGCTGCTGCCAGCCTATGCCTTGTTGATGCTGATTGGCGTGATGGGGGGCTTTTTTGTCGTTCCGCTCAATGCGTTGCTACAGGAGCGGGGTAAAAAAAGCGTCGGGGCGGGGAATGCGATTGCAGTACAAAACCTTGGCGAAAACAGCGCCATGTTGTTGATGCTGGGCATTTACTCGCTGGCGGTAATGATAGGCATCCCGGTCGTGCCCATTGGCATTGGCTTCGGTGCGCTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2966353‑2966073 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctgtttTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGGCAGCAGCTCGTGTTGCA  >  CP009273/2966170‑2966320                                                                                                                                                                                                                                                                                                                                                                                                                                                  ttgtggTTGGCGGGGGGGTACTGATTTTTTCCCTGCAACACGTGCTGCTGCCAGCCGATGCCTTGTTGATGCTGTTTGTCGTGATGGGGGGCTTTTTTGTCGTTCCGCTCAATGCGTTGCTACAGGAGCGGGGTAAAAAAAGCGTCGGGGCGGGGAATGCGATTGCAGTACAAAACCTTGGCGAAAACAGCGCCATGTTGTTGATGCTGGGCATTTACTCGCTGGCGGTAATGATAGGCATCCCGGTCGTGCCCATTGGCATTGGCTTCGGTGC                                                                                                                                                                <  2:227031/268‑1                                                                                                            CTCAATGCGTTGCTACAGGAGCGGGGTAAAAAAAGCGTCGGGGCGGGGAATGCGATTGCAGTACAAAACCTTGGCGAAAACAGCGCCATGTTGTTGATGCTGGGCATTTACTCGCTGGCGGTAATGATAGGCATCCCGGTCGTGCCCATTGGCATTGGCTTCGGTGCGCTGTT                                                                                                                                                          >  1:707381/1‑173                                                                                                                                                                                                           GATGCTGGGCATTTAGTCGCTGGCAGTACAGATAGGCATCCCGGTCGTGCCCATTGGCATTGGCTTCGGTGCGCTGTTTTCGCCAAGGTTTTGTACTGCAA                                                                                                                                   >  1:487360/1‑101                                                                                                                                                                                                            ATGCTGGGCATTTACTCGCTGGCGGTAATGATAGGCATCCCGGTCGTGCCCATTGGCATTGGCTTCGGTGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCTTT                                                                               >  1:587645/1‑152                                                                                                                                                                                                            ATGCTGGGCATTTACTCGCTGGCGGTAATGATAGGCATCCCGGTCGTGCCCATTGGCATTGGCTTCGGTGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCG                                                                                                                  >  1:612217/1‑117                                                                                                                                                                                                            ATGCTGGGCATTTACTCGCTGGCGGTAATGATAGGCATCCCGGTCGTGCCCATTGGCATTGGCTTCGGTGCGCTGTTTTCGCCAAGGTTTTGT                                                                                                                                          >  1:291397/1‑93                                                                                                                                                                                                            ATGCTGGGCATTTACTCGCTGGCGGTAATGATAGGCATCCCGGTCGTGCCCATTGGCATTGGCTTCGGTGCGCTGTTTTCGCCAAGGTTTTGCACTGCAATCGCATTCCCCGCCCCG                                                                                                                  >  2:390317/1‑117                                                                                                                                                                                                               CTGGGCATTTACTCGCTGGCGGTAATGATAGGCATCCCGGTCGTGCCCATTGGCATTGGCTTCGGTGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGC                                                                                                                               <  2:487353/101‑1                                                                                                                                                                                                                TGGGCATTTACTCGCTGGCGGTAATGATATGCATCCCGGTCGTGCCCATTGGCATTGGCTTCGGTGCGCTGTATTCGCCAAGGTGTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGGAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGGCAGCAGCTCGTGTTGCA  <  1:672450/225‑1                                                                                                                                                                                                                TGGGCATTTACTCGCTGGCGGTAATGATAGGCATCCCGGTCGTGCCCATTGGCATTGGCTTCGGTGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGC                                                                           <  2:587636/152‑1                                                                                                                                                                                                                TGGGCATTTACTCGCTGGCGGTAATGATAGGCATCCCGGTCGTGCCCATTGGCATTGGCTTCGGTGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC                                                                                                              <  2:612208/117‑1                                                                                                                                                                                                                TGGGCATTTACTCGCTGGCGGTAATGATAGGCATCCCGGTCGTGCCCATTGGCATTGGCTTCGGTGCGCTGTTTTCGCCAAGGTTTTGTACTG                                                                                                                                      <  2:291391/93‑1                                                                                                                                                                                                                TGGGCATTTACTCGCTGGCGGTAATGATAGGCATCCCGGTCGTGCCCATTGGCATTGGCTTCGGTGCGCTGTTTTCGCCAAGGTTTTGCACTGCAATCGCATTCCCCGCCCCGACGC                                                                                                              <  1:390323/117‑1                                                                                                                                                                                                                                                                                  CGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAG                              >  2:480819/1‑131                                                                                                                                                                                                                                                                                    CTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAAT                                           >  1:307502/1‑116                                                                                                                                                                                                                                                                                      GTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCAT                          <  1:480826/131‑1                                                                                                                                                                                                                                                                                        TTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGC                                       <  2:307496/116‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTTTGATTGGCGTGGTGGTACTGATTTTTTCCCTGCAACACGAGCTGCTGCCAGCCTATGCCTTGTTGATGCTGATTGGCGTGATGGGGGGCTTTTTTGTCGTTCCGCTCAATGCGTTGCTACAGGAGCGGGGTAAAAAAAGCGTCGGGGCGGGGAATGCGATTGCAGTACAAAACCTTGGCGAAAACAGCGCCATGTTGTTGATGCTGGGCATTTACTCGCTGGCGGTAATGATAGGCATCCCGGTCGTGCCCATTGGCATTGGCTTCGGTGCGCTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2966353‑2966073 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctgtttTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGGCAGCAGCTCGTGTTGCA  >  CP009273/2966170‑2966320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.