New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3219548	57 (1.480)	4 (0.110)	4/288	NT	8.9%	intergenic (+18/‑45)	ebgC/ygjI	evolved beta‑D‑galactosidase, beta subunit; cupin superfamily/putative transporter
	?	CP009273	= 3219644	30 (0.850)					coding (52/1434 nt)	ygjI	putative transporter

TATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3219458‑3219548 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcggcaaaagTCAGCGAGAGCAAGCCGAATTTGCCGATTGTATTACGTTTGGTATCAGACATAACACATCTCCGAAAATGAGTAGGGTAGCGGTGGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGCGTTATTGCAGATAAACCGATACGCTTCATGGATATCGCAAATAACGATTTGCCCTTCGTGGACCTCAACGGTTTCTCCGCA  <  CP009273/3219644‑3219390                                                                                                                                                                                                                                                                                                                                                            TATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAAAGTCAGCGAGAGCAAGCCGAATTTGCCGATTGTATTACGTTTGGTATCAGACATAACACATCTCCGAAAATGAGT                                                                                                                                                                                        >  2:206581/1‑164     TGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAAAGTCAGCGAGAGCAAGCCGAATTTGCCGATTGTATTACGTTTGGTATCAGACATAACACATCTCCGAAAATGAGTAGGG                                                                                                                                                                                    <  1:206585/164‑1                              TTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAAAGTCAGCGAGAGCAAGCCGAATTTGCCGATTGTATTACGTTTGGTATCAGACATAACACATCTCCGAAAATGAG                                                                                                                                                                                         >  1:620068/1‑134                                CTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACG                                                                                                                                                                                                                                                                           <  1:235600/50‑1                                  CAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAAAGTCAGCGAGAGCAAGCCGAATTTGCCGATTGTATTACGTTTGGTATCAGACATAACACATCTCCGAAAATGAGTAGG                                                                                                                                                                                     <  2:620059/134‑1                                                                                CGGCGGCAAAAGTCAGCGAGAGCAAGCCGAATTTGCCGATTGTATTACGTTTGGTAT                                                                                                                                                                                                                    <  1:320486/57‑1                                                                                   CGGCAAAAGTCAGCGAGGGCAAGCCGAATTTGCCGATTGTATTA                                                                                                                                                                                                                              >  2:121541/1‑44                                                                                   CGGCAAAAGTCAGCGAGAGCAAGCCGAATTTGCCGATTGTATTACGTTTGGTATCAGACATAACACATCTCCGAAAATGAGTAGGGTAGCGGTGGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGATAACCACTTTTTTG                                                                                        >  1:544386/1‑178                                                                                       AAAAGTCAGCGAGAGCAAGCCGAATTTGCCGATTGTATTACGTTTGGTATCAGACATAACACATCTCCGAAAATGAGTAGGGTAGCGGTGGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGCGTTATTGCAGATAAACCGATACGCTTCATGGATATCGCAAATAACGATTTGCCCTTCGTGGACCTCAACGGTTTCTCCGCA  <  1:276600/260‑1                                                                                       AAAAGTCAGCGAGAGCAAGCCGAATTTGCCGATTGTATTACGTT                                                                                                                                                                                                                          <  1:121542/44‑1                                                                                                                                                                                                                                                                                                                                                            TATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3219458‑3219548 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcggcaaaagTCAGCGAGAGCAAGCCGAATTTGCCGATTGTATTACGTTTGGTATCAGACATAACACATCTCCGAAAATGAGTAGGGTAGCGGTGGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGCGTTATTGCAGATAAACCGATACGCTTCATGGATATCGCAAATAACGATTTGCCCTTCGTGGACCTCAACGGTTTCTCCGCA  <  CP009273/3219644‑3219390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.