New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 358179593 (2.420)12 (0.340) 5/290 NT 13.6% coding (746/1071 nt) ugpC glycerol‑3‑phosphate transporter subunit
?CP009273 = 3582569 67 (1.890)coding (819/846 nt) ugpE glycerol‑3‑phosphate transporter subunit

CCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3581660‑3581795
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtgccttcgt‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACCAAAAGCTGGGATGGTAAAACCCAGGTCATTAAACCGCTGACCCTTGATGTGGCGGATGGCGAATTTATCGTGATGGTCGGGCCGTCTGGCTGCGGGAAATCGACGCTGCTGCGCATGGTTGCCGGGCTGGAGCGGGTGACAGAAGGCGATATCTGGATCAACGACCAGCGCGTGACTGAAATGGAGCCAAAAGATCGCGGGATTGCGATGG  <  CP009273/3582569‑3582300
                                                                                                                                                                                                                                                                                                                                                                                                                           
CCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGC                                                                                                                                                                                                                                                                                               >  2:140380/1‑126
    CTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGC                                                                                                                                                                                                                                                                                           <  1:140381/126‑1
                                                                           CGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAG                                                                                                                                                                                                                              >  2:278188/1‑111
                                                                             GTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAG                                                                                                                                                                                                                              >  1:195293/1‑114
                                                                             GTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAG                                                                                                                                                                                                                              >  1:280117/1‑109
                                                                             GTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAG                                                                                                                                                                                                                              >  1:706716/1‑109
                                                                               AGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAG                                                                                                                                                                                                                          <  1:278193/111‑1
                                                                                 CCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAG                                                                                                                                                                                                                          <  2:195290/114‑1
                                                                                 CCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAG                                                                                                                                                                                                                          <  2:706706/109‑1
                                                                                 CCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAG                                                                                                                                                                                                                          <  2:280112/109‑1
                                                                                        TTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCG                                                                                                                                                                                                                                                                                              <  1:289717/39‑1
                                                                                           GCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAG                                                                                                                                                                                                                              >  2:160870/1‑95
                                                                                            CGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAG                                                                                                                                                                                                                              >  1:327934/1‑94
                                                                                               CAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAG                                                                                                                                                                                                                          <  1:160873/95‑1
                                                                                                AGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAG                                                                                                                                                                                                                          <  2:327928/94‑1
                                                                                                                              tgGCCTTCGT‑‑‑‑‑GCGCGGCCTAGTCGATAGTGAGAAATAAGATGTCAGGACTAAAATTAAAGGCAGTAAACAAAAGCTGGGGTGGTAACACCCNGGTCATTAAACCGCTGACCATTGATGTGGCGGATGGCTAATTTATCGTGATGGTCGGGCCGTCTGGCTGCGGGAAATCGACGCTGCTGCGCATGGTTGCCGGGCTGGAGCGGGTGACAGAAGGCGATATCTGGATCAACGACCAGCGCGTGACTGAAATGGAGCCAAAAGATCGCGGGATTGC       <  1:540535/273‑1
                                                                                                                              GTGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTG                                                                                                                                                                                                                                       <  2:531592/51‑1
                                                                                                                                    TCGT‑‑‑‑‑GCGCGGCCTTGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACCAAAAGCTGGGATGGTCAAACCCAGGTCATTAAACCGCTGACCCTTGATGTGGCGGATGACGAATTTATCGTGATGGTCGGGCCGTCTGGCTGCGGGAAATCGACGCTGCTGCGCATGGTTGCCGGGCTGGAGCGGGTGACAGAAGGCGATATCTGGATCAACGACCAGCGCGTGACTGAAATGGAGCCAAAAGATCGCGGGATTGCGATGG  <  1:694969/274‑1
                                                                                                                                       T‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACCAAAAGCTGGGATGGTAAAACCCAGGTCATTAAACCGCTGACCCTTGATGTGGCGGAT                                                                                                                                                            >  2:445891/1‑117
                                                                                                                                                                                                                                                                                                                                                                                                                           
CCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3581660‑3581795
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtgccttcgt‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACCAAAAGCTGGGATGGTAAAACCCAGGTCATTAAACCGCTGACCCTTGATGTGGCGGATGGCGAATTTATCGTGATGGTCGGGCCGTCTGGCTGCGGGAAATCGACGCTGCTGCGCATGGTTGCCGGGCTGGAGCGGGTGACAGAAGGCGATATCTGGATCAACGACCAGCGCGTGACTGAAATGGAGCCAAAAGATCGCGGGATTGCGATGG  <  CP009273/3582569‑3582300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.