New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4337957	55 (1.430)	19 (0.530)	6/294	NT	25.2%	coding (605/1341 nt)	dcuB	C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor
	?	CP009273	= 4338442	61 (1.690)					coding (120/1341 nt)	dcuB	C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor

GGATTGGTTTTGGTCAGGATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGTACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTGCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4337687‑4337957 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcgtcttCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACCCGAAATATGTCTCAATTGTCGCGCCGTTTGTGACCTGTACACTGACCATTCTTTGCGGTACGGGTCATGTGGTTTACACCATTCTGCCGATCATCTACGACGTCGCCATTAAGAACAACATCCGTCCGGAAC  <  CP009273/4338442‑4338174                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGATTGGTTTTGGTCAGGATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGTACCATCGACAGCGGTTGGCCGCCGCAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTGCCCCGAGGAGAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTGTCTCCAGCAGCGTCGCGGTATAACCGTAAACACACATAGGGGTTTCAGGCAGGGAGATGGATTTCGAGAACTCgacactttaac                                                                                                                                                                                                                                                                            >  2:90832/1‑263     ttGTTTTGGTCAGGATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGTACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTGCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTT                                                                                                                                                                                                                                                                                     <  1:90833/259‑1                                                                                                                                           ATTGCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTT                                                                                                                                                                                                                                                                               >  2:38770/1‑133                                                                                                                                                                                                                           AACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACCCGAAATATGTCTCAATTGTCGCGCCGTTTGTGACCTGTACACTGACCATTCTTTGCGGTACGGGTCATGTGGTTTACACCATTCT                                                 >  1:41807/1‑275                                                                                                                                                                                                                           AACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACCCGAAATATGTCTCAATTGTCGCGCCGT                                                                                                           >  2:274694/1‑217                                                                                                                                                                                                                           AACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACCCGAAATATGTCTCAATTGTCGCGCCGT                                                                                                           >  2:172046/1‑217                                                                                                                                                                                                                           AACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACCCGAAATATGTCTCAATTGTCGCGCCGT                                                                                                           >  2:126693/1‑217                                                                                                                                                                                                                           AACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACCCGAAATATGTCTCAATTGTCGCGCCGT                                                                                                           >  2:126364/1‑217                                                                                                                                                                                                                           AACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACCCGAAATATGTCTCAATTGTC                                                                                                                  >  2:492927/1‑210                                                                                                                                                                                                                           AACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGC                                                                                                                                          >  1:138217/1‑186                                                                                                                                                                                                                           AACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCAGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACCCGAACTATGTCTCAATTGTCGCGCCGT                                                                                                           >  1:423017/1‑217                                                                                                                                                                                                                           AACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCA                                                                                                                                                                                                                                                                  >  2:698104/1‑66                                                                                                                                                                                                                           AACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCC                                                                                                                                                                                                                                                                   >  2:463964/1‑65                                                                                                                                                                                                                           AACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTACAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACCCGAAATATGTCTCAATTGTCGCGCCGTTTGTGACCTGTACACTGACCATTCTTTGCGGTACGGGTCATGTGGTTTACACCATTCT                                                 >  1:130855/1‑275                                                                                                                                                                                                                               TACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCGGGTA                                                                                                                                                                                                                                                              <  1:698113/66‑1                                                                                                                                                                                                                               TACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACCCGAAATATGTCTCAATTGTCGCGCCGTTTGT                                                                                                       <  1:126365/217‑1                                                                                                                                                                                                                               TACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACCCGAAATATGTCTCAATTGTCGCGCCGTTTGT                                                                                                       <  1:274699/217‑1                                                                                                                                                                                                                               TACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACCCGAAATATGTCTCAATTGTCGCGCCGTTTGT                                                                                                       <  1:172049/217‑1                                                                                                                                                                                                                               TACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACCCGAAATATGTCTCAATTGTCGCGCCGTTTGT                                                                                                       <  1:126694/217‑1                                                                                                                                                                                                                               TACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACCCGAAATATGTCTCAATTGTCGCGC                                                                                                              <  1:492934/210‑1                                                                                                                                                                                                                               TACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACC                                                                                                                                      <  2:138216/186‑1                                                                                                                                                                                                                               TACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTCCACCTTCAGCCAGGT                                                                                                                                                                                                                                                               <  1:463971/65‑1                                                                                                                                                                                                                                                                 GGAACTCTTCGTCTTCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACCCGAAATATGTCTCACTTGTCGCGCCGTTTGTGACCTGTACACTGACCATTCTTTGCGGTACGGGTCATGTGGTTTACACCATTCTGCCGATCATCTACGACGTCGCCATTAAGAACAACATCC           >  1:245576/1‑275                                                                                                                                                                                                                                                                       CTTCGTCTTCCACCTTCATCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCCTCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAATCTGCTGCGCCGCAACCCGAAATATGTCTCAATTGTCGCGCCGTTTGTGACCTGTACACTGACCATTCTTTGCGGTACGGGTCATGTGGTTTACACCATTCTGCCGATCATCTACGACGTCGCCATTAAGAACAACATCCGTCCGG     <  1:22905/275‑1                                                                                                                                                                                                                                                                          CGTCTTCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGACGCTGCTGCGCCGCAACCCGAAATATGTCTCAATTGTCGCGCCGTTTGTGACCTGTACACTGACCATTCTTTGCGGTACGGTTCATGTGGTTTACACAATTCTGCCGATCATCTACGACGTCGCCATTAAGACAAACATCCGCCCGGAAC  >  2:319058/1‑275                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGATTGGTTTTGGTCAGGATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGTACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTGCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4337687‑4337957 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcgtcttCCACCTTCAGCCAGGTAAACCACCAGTTGATGTCATGCTGGTTATCATTGCGGTGGTGGCGGCATCGGCGACCTTGCAAGCTTCGGGCGGTCTTGATGTCATGCTGCAAATTGCCGAGAAGCTGCTGCGCCGCAACCCGAAATATGTCTCAATTGTCGCGCCGTTTGTGACCTGTACACTGACCATTCTTTGCGGTACGGGTCATGTGGTTTACACCATTCTGCCGATCATCTACGACGTCGCCATTAAGAACAACATCCGTCCGGAAC  <  CP009273/4338442‑4338174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.